View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_low_14 (Length: 300)
Name: NF9768_low_14
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 2311657 - 2311375
Alignment:
| Q |
15 |
catttcttatatatcactgacatcagaccatgtcatcagaccacataaaagatcataccacaactacatattatcagatatttctcggattttctaacat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311657 |
catttcttatatatcactgacatcagaccatgtcatcagaccacataaaaggtcataccacaactacatattatcagatatttctcggattttctaacat |
2311558 |
T |
|
| Q |
115 |
aaagcgtcgcttatttgaaaacacaagtctaacaatcaagtcccataaagatcataatacaaccatacc-aaactggtgaatgtgcattcctaaagaatg |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
2311557 |
aaagcgtcgcttattttaaaacacaagtctaacaatcaagtcccataaagatcataatacaaccataccaaaactggtgaacgtgcattcctaaagaatg |
2311458 |
T |
|
| Q |
214 |
aaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagcctatgctt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2311457 |
aaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctt |
2311375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 2927613 - 2927895
Alignment:
| Q |
15 |
catttcttatatatcactgacatcagaccatgtcatcagaccacataaaagatcataccacaactacatattatcagatatttctcggattttctaacat |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927613 |
catttcttatatatcactgacatcagaccatgccatcagaccacagaaaagatcataatacaactacatattatcagatatttctcggattttctaacat |
2927712 |
T |
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| Q |
115 |
aaagcgtcgcttatttgaaaacacaagtctaacaatcaagtcccataaagatcataatacaaccatacc-aaactggtgaatgtgcattcctaaagaatg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2927713 |
aaagcgtcgcttatttgaaaacacaagtctaacaatcaagtcccataaagatcataatacaaccataccaaaactggtgaatgtgcattcctaaagaatg |
2927812 |
T |
|
| Q |
214 |
aaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagcctatgctt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2927813 |
aaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctt |
2927895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 10173517 - 10173599
Alignment:
| Q |
207 |
aagaatgaaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagcc |
289 |
Q |
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||||||||||||| | |||| ||| ||| |||||||||| ||||| | |||||||||||| | |||||||| |||| ||||| |
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| T |
10173517 |
aagaatgaaatcattcaaccccacgcctgcctcttgcatctttatacaaaataagagcttcctgcattatctcaggtcgagcc |
10173599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 29088671 - 29088751
Alignment:
| Q |
202 |
tcctaaagaatgaaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttagg |
282 |
Q |
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|||||||||||||||||| | || | ||| |||| ||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
29088671 |
tcctaaagaatgaaatcattcaatcccacgtcttgttcttgcatcattatacaaagtaagagcttcttccattatcttagg |
29088751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 8083175 - 8083223
Alignment:
| Q |
204 |
ctaaagaatgaaatcagttaacctcactccttgctcttgcatcattata |
252 |
Q |
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|||||||||||||||| | |||||||| ||| |||||| |||||||||| |
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| T |
8083175 |
ctaaagaatgaaatcattcaacctcacgcctcgctcttacatcattata |
8083223 |
T |
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