View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_low_16 (Length: 280)
Name: NF9768_low_16
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 41761060 - 41760812
Alignment:
| Q |
17 |
tgctcttaccaattgttgaggagtttgaatagccagaatagaaagtggtggagtagaagatcgattgagaacaaagtcaccagccacagcaacttgagac |
116 |
Q |
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| T |
41761060 |
tgctcttaccaattgttgaggagtttgaataacctgaatagaaagtggtggagtagaagatcgattgagaacaaagtcaccagccacagcaacttgagac |
41760961 |
T |
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| Q |
117 |
ttctccatagtttttgtaacagcaccactttgtgaactccataaatggtgtaggtatggaaaaggaatccaatcagaagggttaggacccgatacagaaa |
216 |
Q |
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| T |
41760960 |
ttctccatagtttttgtaacagcaccactttgtgaactccataaatggtgtaggtatggaaaaggaacccaatcagaagggttaggacccgatacagaaa |
41760861 |
T |
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| Q |
217 |
caagcactgcaatcactatgagtggaaccataataaacaagagttttat |
265 |
Q |
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| T |
41760860 |
caagcactgcaatcactatgagtggaaccataataaacaagagttttat |
41760812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 41752710 - 41752674
Alignment:
| Q |
97 |
cagccacagcaacttgagacttctccatagtttttgt |
133 |
Q |
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| T |
41752710 |
cagccacaacaacttgagccttctccatagtttttgt |
41752674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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