View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_low_19 (Length: 250)
Name: NF9768_low_19
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 8841762 - 8841536
Alignment:
| Q |
1 |
aattatacaactagatgttcaatcacattctggatatttactttcttacaggtaactgtgtacactttcttttactgtgtcaaataatgtgacttaattt |
100 |
Q |
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| T |
8841762 |
aattatacaactagatgttcaatcacattctggatatttactttcttacaggtaactgtgtacactttcttttactgtgtcaaat----ttac--aatta |
8841669 |
T |
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| Q |
101 |
gatccctacaactttagtaattaaattttgttttatagataccagttactgtaggggtttctctataccaagcaacaggcctatatcaagggaagaagat |
200 |
Q |
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| T |
8841668 |
----cttacaaatttagtaattaaattttgttttatagataccagttactgtaggggtttctctataccaagcaacaggcctatatcaagggaagaagat |
8841573 |
T |
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| Q |
201 |
tactatttccaaacaagatcatggcacacattggcct |
237 |
Q |
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| T |
8841572 |
cactatttccaaacaagatcatggcacacattggcct |
8841536 |
T |
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