View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_low_2 (Length: 731)
Name: NF9768_low_2
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 40376973 - 40376549
Alignment:
| Q |
17 |
aatcgaaccaagcaaaccatgtgtcaattgaattgaaccaagcaaaccatttccacgttgacgatcaaaccctttcaaaagcnnnnnnnncaaaatcaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40376973 |
aatcgaaccaagcaaaccatgtgtcaattgaattgaaccaagcaaaccatttccacgttgacgatcaaaccctttcaaaagcaaaaaaa-caaaatcaat |
40376875 |
T |
|
| Q |
117 |
aactgtagattaaattgagttcatgaatcatgagatccacattaaccaaaactaagaaaaatccaaaaccttgtacatcagcaacagttgatgctgccaa |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40376874 |
aactgtaaattaaattgagttcatgaatcatgagatccacattaaccaaaactaagaaaaatccaaaaccttgtacatcagcaacagttgatgctgccaa |
40376775 |
T |
|
| Q |
217 |
gctgtcacgcttgtacacaacctttccattattcacagcaagaacacaacagtccttggataactttttagcacaatacttagctacagagctagatgac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40376774 |
gctgtcacgcttgtacacaacctttccattattcacagcaagaacacaacagtccttggataactttttagcacaatacttagctacagagctagatgac |
40376675 |
T |
|
| Q |
317 |
cgaattctatgaaaaccatgaacacttccaacaataacatgagttgcagaataagcatttgcttctcgtaccaaaattctcttcaccgatgatccacggc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40376674 |
cgaattctatgaaaaccatgaacacttccaacaataacatgagatgcagaataagcatttgcttctcgtaccaaaattctcttcaccgatgatccacggc |
40376575 |
T |
|
| Q |
417 |
aaatttttagcttaagatccacctac |
442 |
Q |
| |
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|||||||||| ||||||||||||||| |
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| T |
40376574 |
aaatttttagtttaagatccacctac |
40376549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 506 - 720
Target Start/End: Complemental strand, 40376485 - 40376270
Alignment:
| Q |
506 |
gcttattaggatcataattggaggtgagaatattaaattttatgcattaaccatttgtaatcaatttgatgatagaaaacgaattttcatattcatctc- |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
40376485 |
gcttattaggatcataattggaggtgagaatattaaattttatgcattaaccatttgtaatcaatttgatgactgaaaatgaattttcatattcatcttt |
40376386 |
T |
|
| Q |
605 |
acaaattnnnnnnnttcaaaagaggaataagaaattgaacctgcttcaaattacagaatccttcataaacattaagaacagagtcaaaagccttaacaag |
704 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40376385 |
acaaattaaaaaaattcaaaagaggaataagaaattgaacctgcttcaaattacagaatccttcataaacattaagaacagagtcaaaagccttaacaag |
40376286 |
T |
|
| Q |
705 |
agaaagcagcgatgat |
720 |
Q |
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|||||||| ||||||| |
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| T |
40376285 |
agaaagcaacgatgat |
40376270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 342 - 442
Target Start/End: Complemental strand, 10258182 - 10258082
Alignment:
| Q |
342 |
ttccaacaataacatgagttgcagaataagcatttgcttctcgtaccaaaattctcttcaccgatgatccacggcaaatttttagcttaagatccaccta |
441 |
Q |
| |
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||||||| ||||||||||||||| |||| |||||||||||| |||||||||||| |||| || || || ||||||||||||||||| ||||||||||| |
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| T |
10258182 |
ttccaactataacatgagttgcacaatattcatttgcttctctaaccaaaattctcctcactgacgaaccccggcaaatttttagcttcagatccaccta |
10258083 |
T |
|
| Q |
442 |
c |
442 |
Q |
| |
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| |
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|
| T |
10258082 |
c |
10258082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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