View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9768_low_3 (Length: 538)
Name: NF9768_low_3
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 21 - 521
Target Start/End: Original strand, 40519265 - 40519766
Alignment:
| Q |
21 |
tattggcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttcccaatt-gcttaacctatctattttacaacaaatacg |
119 |
Q |
| |
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||||||||||| |||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40519265 |
tattggcaaatacactgtcttaaaattttctt-gataatttttgtcactgtatttatcatttcccaatttgcttaacctatctattttacaacaaatacg |
40519363 |
T |
|
| Q |
120 |
aaactattcacaaattaatatggtcaggaacgtaagttctacaaataggacaagatccttgttgtactagccacttgtcaatgcactctaaatgaaaaat |
219 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40519364 |
aaactattcacgaattaatatggtcaggaacgtaagttctacaaataggacatgatccttgttgtactagccacttgtcaatgcactctaaatgaaaaat |
40519463 |
T |
|
| Q |
220 |
gtggctacattttggaagtattctcaccaattcttcattctcaaaatcctgcaaatcaaaatgacaccctagtacagttatataccagatggccacatca |
319 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
40519464 |
gtggctacattttggaagtaatctcaccaattcttcattctcaaaatcctgcaaatcaaaatgacaccctattacatttatataccagatggtcacatca |
40519563 |
T |
|
| Q |
320 |
acaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcacacttttatgtaaattaacatattaattaacattgtgat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40519564 |
acaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcacacttttatgtaaattaacatattaattaacattgtgat |
40519663 |
T |
|
| Q |
420 |
gactttgtattggga-tttttgttttgttatattatcctctgcattgttagttttaacaattaagaggctagaaaaaagttaaaatttttagagctcaaa |
518 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40519664 |
gactttgtattgggatttttttttttgttatattatcctctgcattgttagttttaacaattaagaggctagaaaaaagttaaaatttttagagctcaaa |
40519763 |
T |
|
| Q |
519 |
act |
521 |
Q |
| |
|
||| |
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|
| T |
40519764 |
act |
40519766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 282 - 521
Target Start/End: Complemental strand, 41782118 - 41781884
Alignment:
| Q |
282 |
gacaccctagtacagttatataccagatggccacatcaacaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcac |
381 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
41782118 |
gacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgacaattatttcccatggtctcatgaagaacttcaacatgtcacattcac |
41782019 |
T |
|
| Q |
382 |
acttttatgtaaattaacatattaattaacattgtgatgactttgtattgggatttttgttttgttatattatcctc-tgcattgttagttttaacaatt |
480 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| ||| | |||||| |||| |||||||||||||||||||||| |
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| T |
41782018 |
acttttatgtaaattaacata----ttaacattgcgatgactttgtattcgaatttttattt--tcatattagcctcttgcattgttagttttaacaatt |
41781925 |
T |
|
| Q |
481 |
aagaggctagaaaaaagttaaaatttttagagctcaaaact |
521 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||| |
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|
| T |
41781924 |
aagaggctagaaaaaagtcaaaaaatttagagttcaaaact |
41781884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 127 - 275
Target Start/End: Original strand, 40508315 - 40508463
Alignment:
| Q |
127 |
tcacaaattaatatggtcaggaacgtaagttctacaaataggacaagatccttgttgtactagccacttgtcaatgcactctaaatgaaaaatgtggcta |
226 |
Q |
| |
|
|||| ||||||| || ||| ||| |||||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
40508315 |
tcacgaattaatgtgatcaacaacataagttctacaaatgggacatgatccttgttggattagccacttgtcaatgcattctaaatgaaaaatatggcta |
40508414 |
T |
|
| Q |
227 |
cattttggaagtattctcaccaattcttcattctcaaaatcctgcaaat |
275 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40508415 |
cattttggaagtattctgaccaattcttcattctcaaaatcctgcaaat |
40508463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 292 - 406
Target Start/End: Original strand, 40510566 - 40510680
Alignment:
| Q |
292 |
tacagttatataccagatggccacatcaacaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcacacttttatgt |
391 |
Q |
| |
|
|||| |||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||||||||| |
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|
| T |
40510566 |
tacacttatctacccgatggtcacatcaacaatttaatgtgacaattatttcccatggtctcatcgacaattttggtacgtcacattcacacttttatgt |
40510665 |
T |
|
| Q |
392 |
aaattaacatattaa |
406 |
Q |
| |
|
|| |||||| ||||| |
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|
| T |
40510666 |
aatttaacacattaa |
40510680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 280 - 522
Target Start/End: Original strand, 18163560 - 18163796
Alignment:
| Q |
280 |
atgacaccctagtacagttatataccagatggccacatcaacaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattc |
379 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
18163560 |
atgacaccctaataaatttatataccagatggccacatcaacaatttaatgtgacaatgattcctcatggtctcatgaacaacttcaacatgtcacattc |
18163659 |
T |
|
| Q |
380 |
acacttttatgtaaattaacatattaattaacattgtgatgactttgtattgggatttttgttttgtt-atattatcctctgcattgttagttttaacaa |
478 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||| || ||| || ||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
18163660 |
acacttttatgtaaattaacat----attaacattttgatgactttgttttaggactt---ttttgttcatattagcctctgcattgttagttttaacaa |
18163752 |
T |
|
| Q |
479 |
ttaagaggctagaaaaaagttaaaatttttagagctcaaaactt |
522 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
18163753 |
ctaagaggctagaaaaaagttaaaaattttatagctcaaaactt |
18163796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 14131248 - 14131306
Alignment:
| Q |
26 |
gcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
85 |
Q |
| |
|
|||||| |||||||||||||||||| || |||| ||||||| ||||||||||||||||| |
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|
| T |
14131248 |
gcaaatacactatcttaaaattttc-ttcataaattttgtcactgtatctatcatttccc |
14131306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 31264850 - 31264908
Alignment:
| Q |
26 |
gcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
85 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
31264850 |
gcaaatacactatcttaaaatttg-tttgataaattttgtcactgtatctatcatttccc |
31264908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 20143062 - 20143118
Alignment:
| Q |
28 |
aaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
85 |
Q |
| |
|
|||| ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||| |
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|
| T |
20143062 |
aaatacactatcttgaaattttctt-gataaattttgtcactgtatctatcatttccc |
20143118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 34713594 - 34713651
Alignment:
| Q |
27 |
caaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
85 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
34713594 |
caaatacactatcttaaaattttc-ttgataaattttgtcactgtatctatcatttccc |
34713651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 16528659 - 16528717
Alignment:
| Q |
27 |
caaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccca |
86 |
Q |
| |
|
||||| |||||||||||||||||| |||||| | |||||| |||||||||||||||||| |
|
|
| T |
16528659 |
caaatacactatcttaaaattttc-ttgatacatgttgtcgctgtatctatcatttccca |
16528717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 19663375 - 19663432
Alignment:
| Q |
27 |
caaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
85 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
19663375 |
caaatacactctcttaaaattttctt-gataaattttgtcactgtatctatcatttccc |
19663432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 20125675 - 20125743
Alignment:
| Q |
19 |
ggtattggcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttcccaat |
88 |
Q |
| |
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|||||| |||||| |||| |||| |||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
20125675 |
ggtattagcaaatacactgtcttcaaattttctt-gataaaatttgtcattgtatctatcatttcccaat |
20125743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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