View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_low_4 (Length: 514)
Name: NF9768_low_4
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 244 - 496
Target Start/End: Complemental strand, 9662581 - 9662326
Alignment:
| Q |
244 |
aagaatatgtaaaagtttaacgggagaatgtgcaagaaaa--tgctagaaatttatttaatcaaacaattaaattcaagttgtctatgagttttactnnn |
341 |
Q |
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|||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |
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| T |
9662581 |
aagaatatgtaaaagtttaacgggagaatgagcaaaaaaaaatgctagaaatttatttaaccaaacaattaaattcaaattgtttatgagttttactaaa |
9662482 |
T |
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| Q |
342 |
nnnncgaattgttgaacctgatttcaatttttaggtggaataattattagtcagactttacacaccttccaattaaactctagattactaaggctcccta |
441 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
9662481 |
gaa-cgaattgttgaacctgatttcaatttttaagtggaataattattagtcagactttacacaccttccgattaaactctagattactaaggcccccta |
9662383 |
T |
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| Q |
442 |
cccttaaaaactaaaaggttgac--nnnnnnntactagaaattttagtggccatcaa |
496 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
9662382 |
tccttaaaaactaaaaggttaacaaaaaaaaatactagaaattttagtggccatcaa |
9662326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 9662660 - 9662564
Alignment:
| Q |
141 |
agatgaatctctaaaaatgagtttaaatgtgaatctttattatcgaaaggtctatgt--atatgttcaaaacaaaatttaagaatatgtaaaagttt |
235 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9662660 |
agatgaatctctaaaaatgagtttaaatgtgaacctttattatcgaaaggtctatgtatatatgttcaaaacaaaatttaagaatatgtaaaagttt |
9662564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 17753434 - 17753555
Alignment:
| Q |
18 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatccctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
117 |
Q |
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| T |
17753434 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatctctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
17753533 |
T |
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| Q |
118 |
taacaaactcaaaaggtcgagt |
139 |
Q |
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||||||||||||| | |||||| |
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| T |
17753534 |
taacaaactcaaatgatcgagt |
17753555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 17762421 - 17762542
Alignment:
| Q |
18 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatccctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17762421 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatctctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
17762520 |
T |
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| Q |
118 |
taacaaactcaaaaggtcgagt |
139 |
Q |
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||||||||||||| | |||||| |
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| T |
17762521 |
taacaaactcaaatgatcgagt |
17762542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 15735391 - 15735503
Alignment:
| Q |
18 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatccctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
117 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15735391 |
gtaattgacaataaagatggcgaggtgcgtgccatggttcctatctctggtggttcagtagtgaagaacattgtattcagcaggaatggacagtatcttc |
15735490 |
T |
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| Q |
118 |
taacaaactcaaa |
130 |
Q |
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||||||||||||| |
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| T |
15735491 |
taacaaactcaaa |
15735503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 17739286 - 17739407
Alignment:
| Q |
18 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatccctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
117 |
Q |
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|||||||||||||||||||||||| | | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17739286 |
gtaattgacagtaaagatggcgaggtacatgccatggttcctatctctggtggttcagtagtgaagaacattgtattcagcaggaatggacagtatcttc |
17739385 |
T |
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| Q |
118 |
taacaaactcaaaaggtcgagt |
139 |
Q |
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||||||||||||| | |||||| |
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| T |
17739386 |
taacaaactcaaatgatcgagt |
17739407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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