View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_low_5 (Length: 409)
Name: NF9768_low_5
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 24253628 - 24253253
Alignment:
| Q |
19 |
atccttcaccatcaaacttgacggttgcaggtacctcgaagttgatgcgacactcttcagtaagtgttatgtagtcctcctcctcagatgaatccattgt |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24253628 |
atccttcaccatcaaacctgacggttgcaggtacctcgaagttgatgcgacactcttcagtaagtgttatgtagtcctcctc---agatgaatccattgt |
24253532 |
T |
|
| Q |
119 |
tgttttcagcaattcttgcagaaaattgatgcagcacggactttgcttcgccatttcctcttttggcatatgaacttggtacttttcgaggatctggtga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24253531 |
tgttttcagcaattcttgcagaaaattgatgcagcacggactttgcttcgccatttcctcttttggcatatgaacttggtacttttcgaggatctggtga |
24253432 |
T |
|
| Q |
219 |
agctccttgaattcttcagccacttctttcttagcttgcttagtttgtacctgacgagtgtcttcccctacttcaatagtgttgatatgctcttattttt |
318 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24253431 |
agctccttgaattcttcagctacttctttctttgcttgcttagtttgtgcctgacgagtgtcttcccctacttcaatagcgttgatatgctcttattttc |
24253332 |
T |
|
| Q |
319 |
cagttggttttggctcctgcggctcctgctgcttacgatctatttccttctgaaactcgaggtatcctggttccatctc |
397 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24253331 |
cagttggttttggctcctgcggctcctgccgcttacgatctatttccttctgaaactcgaggtatcctggttccatctc |
24253253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 22567489 - 22567113
Alignment:
| Q |
19 |
atccttcaccatcaaacttgacggttgcaggtacctcgaagttgatgcgacactcttcagtaagtgttatgtagtcctcctcctcagatgaatccattgt |
118 |
Q |
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|
|||||||||||| ||||||||||||| | | ||||||||||| ||| |||||||||||||||||| || |||||||||| | ||||||||| |||| |
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| T |
22567489 |
atccttcaccattgaacttgacggttgtaagaacctcgaagttaatgtgacactcttcagtaagtgatacgtagtcctccgc---agatgaatcaattgc |
22567393 |
T |
|
| Q |
119 |
tgttttcagcaattcttgcagaaaattgatgcagcacggactttgcttcgccatttcctcttttggcatatgaacttggtacttttcgaggatctggtga |
218 |
Q |
| |
|
||||||||| | ||||| ||||| |||||| ||| |||||||||||| |||||||| | || |||||||||||||| |||||||||||||||||| |
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| T |
22567392 |
tgttttcagtagttcttatagaaagttgatgttgcatggactttgcttcatcatttcctttactgtgatatgaacttggtatttttcgaggatctggtga |
22567293 |
T |
|
| Q |
219 |
agctccttgaattcttcagccacttctttcttagcttgcttagtttgtacctgacgagtgtcttcccctacttcaatagtgttgatatgctcttattttt |
318 |
Q |
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|
||||||||||| || ||| | | ||||||||| || | |||| ||| | |||| ||||||||||||||||||||||||| ||||| ||||| | |||| |
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| T |
22567292 |
agctccttgaactcgtcatctaattctttctttgcctacttaatttctgcctggcgagtgtcttcccctacttcaatagcattgatctgctcatcttttc |
22567193 |
T |
|
| Q |
319 |
cagttggttttggctcctgcggctcctgctgcttacgatctatttccttctgaaactcgaggtatcctggttccatctct |
398 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||| |
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| T |
22567192 |
cagttggttttgatttctgcagctcctgctgcttgagatctacttccttctgaaactcgaggtatcttggttccttctct |
22567113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 11389879 - 11390249
Alignment:
| Q |
19 |
atccttcaccatcaaacttgacggttgcaggtacctcgaagttgatgcgacactcttcagtaagtgttatgtagtcctcctcctcagatgaatccattgt |
118 |
Q |
| |
|
|||||||||| ||||||||| ||| || |||||||||||||||||| || ||||||||||| || |||||||||||| || |||||||| || ||| |
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| T |
11389879 |
atccttcaccgtcaaacttggcggacacatgtacctcgaagttgatgcaaccctcttcagtaactgatatgtagtcctcttc---agatgaattcactgt |
11389975 |
T |
|
| Q |
119 |
tgttttcagcaattcttgcagaaaattgatgcagcacggactttgcttcgccatttcctcttttggcatatgaacttggtacttttcgaggatctggtga |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| | |||||| ||||| ||| ||||||||||||||||| |
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| T |
11389976 |
tgttttcagcagttcttgcagaaaattgatgcaacacatactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtgg |
11390075 |
T |
|
| Q |
219 |
agctccttgaattcttcagccacttctttcttagcttgcttagtttgtacctgacgagtgtcttcccctacttcaatagtgttgatatgctcttattttt |
318 |
Q |
| |
|
||||||||||| | ||| || ||||||||||| || |||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
11390076 |
agctccttgaagttttccgctacttctttctttgcctgcttaatttctacctgacaagtgtcttcccctacttcaataatgttgatatgctcttcttttc |
11390175 |
T |
|
| Q |
319 |
cagttggttttggctcctgcggctcctgctgcttacgatctatttccttctgaaactcgaggtatcctggttcc |
392 |
Q |
| |
|
||||||||||| | ||| |||||| | | || |||||| |||||| ||||| || |||||| |||||||| |
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| T |
11390176 |
tagttggttttgatttatgcagctcctaccgttttagatctacttccttatgaaaatcaaggtattctggttcc |
11390249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 11406540 - 11406910
Alignment:
| Q |
19 |
atccttcaccatcaaacttgacggttgcaggtacctcgaagttgatgcgacactcttcagtaagtgttatgtagtcctcctcctcagatgaatccattgt |
118 |
Q |
| |
|
|||||||||| ||||||||| ||| || |||||||||||||||||| || ||||||||||| || |||||||||||| || |||||||| || ||| |
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| T |
11406540 |
atccttcaccgtcaaacttggcggacacatgtacctcgaagttgatgcaaccctcttcagtaactgatatgtagtcctcttc---agatgaattcactgt |
11406636 |
T |
|
| Q |
119 |
tgttttcagcaattcttgcagaaaattgatgcagcacggactttgcttcgccatttcctcttttggcatatgaacttggtacttttcgaggatctggtga |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| | |||||| ||||| ||| ||||||||||||||||| |
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| T |
11406637 |
tgttttcagcagttcttgcagaaaattgatgcaacacatactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtgg |
11406736 |
T |
|
| Q |
219 |
agctccttgaattcttcagccacttctttcttagcttgcttagtttgtacctgacgagtgtcttcccctacttcaatagtgttgatatgctcttattttt |
318 |
Q |
| |
|
||||||||||| | ||| || ||||||||||| || |||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
11406737 |
agctccttgaagttttccgctacttctttctttgcctgcttaatttctacctgacaagtgtcttcccctacttcaataatgttgatatgctcttcttttc |
11406836 |
T |
|
| Q |
319 |
cagttggttttggctcctgcggctcctgctgcttacgatctatttccttctgaaactcgaggtatcctggttcc |
392 |
Q |
| |
|
||||||||||| | ||| |||||| | | || |||||| |||||| ||||| || |||||| |||||||| |
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|
| T |
11406837 |
tagttggttttgatttatgcagctcctaccgttttagatctacttccttatgaaaatcaaggtattctggttcc |
11406910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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