View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_low_7 (Length: 406)
Name: NF9768_low_7
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Complemental strand, 5739722 - 5739337
Alignment:
| Q |
15 |
aacaccaacatcaatcagccgagaatggctattcaatttacaaatctgcctccattttcatcaaggaggaagcctctgtatttgttgtttttgttgatga |
114 |
Q |
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| T |
5739722 |
aacaccaacatcaatcagccgagaatggctattcaatttacaaatctgcctccattttcatcaaggaggaagcctctgtatttgttgtttttgttgatga |
5739623 |
T |
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| Q |
115 |
agcctcttgattttggaaagtgtggtagtttctctggcagctgccattgttagaaaaaagaaataattatgaatagttaagtaaagctagnnnnnnnaca |
214 |
Q |
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| T |
5739622 |
agcctcttgattttggaaagtgtggtagtttctctggcagctgccattgttagaaaaaagaaataattatgaatagttaagtaaagctagtttttttaca |
5739523 |
T |
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| Q |
215 |
caaagatggaaacaaaaacgccaagaagccacataaagtccaacgaagacatgttcctaatttgtggataaacatgtaaatttgtaatagatatgactat |
314 |
Q |
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| T |
5739522 |
caaagatggaaacaaaaacaccaagaagccacataaagtccaacgaagacatg--------ttgtggataaacatgtaaatttgtaatagatatgactat |
5739431 |
T |
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| Q |
315 |
ttgtttgacatacaaagtaagttctccatttttaaataaaattttcct--cacataagaataaagactcgtcaacaatttgtttaaggtgtcta |
406 |
Q |
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| T |
5739430 |
ttgtttgacatacaaagtaagttctccatttttaaataaaattttcctcacacataagaataaagactcgtcaacaatttgcttaaggtgtcta |
5739337 |
T |
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