View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_low_9 (Length: 400)
Name: NF9768_low_9
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 43327040 - 43327418
Alignment:
| Q |
11 |
cagagatgagtccagtccgaagcatctgaggtatggatgcaatcaaaagatatgatgcaagcatggctggccaaaacccagcagtagggataccaaactt |
110 |
Q |
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| T |
43327040 |
cagagatgagtccagtccgaagcatctgaggtatggatgcaatcaaaagatatgatgcaagcatggctggccaaaacccagcagtagggataccaaactt |
43327139 |
T |
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| Q |
111 |
gcttgccacttgtatggcccaagatgccaacaagtcaaccaccaccaaacatacatcatcaa------gattttgattttgaagaaactcttcaaaatgg |
204 |
Q |
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| T |
43327140 |
gcttgccacttgtatggcccaagatgccaacaagtcaaccacaaccaaacatacatcatcaagattttgattttgattttgaagaaactcttcaaaatgg |
43327239 |
T |
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| Q |
205 |
tttggcattatactctccatggatgattcaatggcaaagaaatctggtgttgtactgtcctcttccatcccatctgccaaagcaacccacttgatgatga |
304 |
Q |
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| T |
43327240 |
tttggcattatactctccatggatgattcaatggcaaagaaatctggtgttgtactgtcctcttccatcccatctgccaaagcaacccact---tgatga |
43327336 |
T |
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| Q |
305 |
tcttattnnnnnnnnnnnnnnnnntattattaatcttcttatgaacatgttgagggagaactatcacggcttcaaatccttg |
386 |
Q |
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| T |
43327337 |
tcctatcatcatcatcatcatcattattattaatcttcttatgaacatgttgagggaggactatcacggcttcaaatccttg |
43327418 |
T |
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