View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9769_low_2 (Length: 245)
Name: NF9769_low_2
Description: NF9769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9769_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 45392572 - 45392807
Alignment:
| Q |
1 |
tatcataccattactaacaaaacctctaatacaaagaggctaacagaaatttaatctgnnnnnnnnctatatgctagattgttatccattttatatatta |
100 |
Q |
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| T |
45392572 |
tatcataccattactaacaaaacctctaatacaaagaggctaacagaaatttaatctgaaaaaaaactatatgctagattgttatccattttatataata |
45392671 |
T |
|
| Q |
101 |
ggaaatctttaataatgcttgatatgtaaaatcataacattatgagttgagttaacaaatcaaatcacaagcattcacgaagttagaaatataacattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45392672 |
ggaaatctttaataatgcttgatatgtaaaatcataacattatgagttgagttaacaaatcaaatcacaagcattcacgaagttagaaatataacagtat |
45392771 |
T |
|
| Q |
201 |
agcttacttcttttggatgtgttctgaacctctgag |
236 |
Q |
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| T |
45392772 |
agcttaattcttttggatgtgttctgaacctctgag |
45392807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 52739347 - 52739455
Alignment:
| Q |
67 |
ctatatgctagattgttatccattttatatattaggaaatctttaataatgcttgatatgtaaaatcataacattatgagttgagttaacaaatcaaatc |
166 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
52739347 |
ctatatgctagattgttatccattttatatgttaggaaatctttaagaatgcttgataggtaaaatcataacattatgagttgagttaacaaaccaaatc |
52739446 |
T |
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| Q |
167 |
acaagcatt |
175 |
Q |
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||||||||| |
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| T |
52739447 |
acaagcatt |
52739455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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