View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9769_low_3 (Length: 225)
Name: NF9769_low_3
Description: NF9769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9769_low_3 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 40944027 - 40944247
Alignment:
| Q |
5 |
atggttctgatgcttattctgcttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaaca |
104 |
Q |
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| T |
40944027 |
atggttctgatgcttattctgcttgtttttcagatttttgaatgctggaatatttggaaaaggaagtgagtcaagccacacacttccacacacagcaaca |
40944126 |
T |
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| Q |
105 |
agagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacg |
204 |
Q |
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| T |
40944127 |
agagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacg |
40944226 |
T |
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| Q |
205 |
tcactccatgtttaccacttc |
225 |
Q |
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| T |
40944227 |
tcactccatgtttaccacttc |
40944247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 40958013 - 40958212
Alignment:
| Q |
26 |
cttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgaga |
125 |
Q |
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| T |
40958013 |
cttgttttccaggtttttgaatgcaggaatattcggaaatggaacagagtcaaatcacacactaccacacacggcaacaagagcagccatgctagtgaga |
40958112 |
T |
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| Q |
126 |
atcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttc |
225 |
Q |
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| T |
40958113 |
atcaacacactcctccaaggctattcaggaattagatttgaaatcttggaagccatcactaagctccttaacaacaacgtcactccatgtttaccacttc |
40958212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 28185358 - 28185172
Alignment:
| Q |
39 |
tttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacacactcc |
138 |
Q |
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| T |
28185358 |
tttttgaatgccggaatatttggcaatggtacagaatcaaattgtacactaccacatacagcaacaagagctgcaatgcttgtgaggatcaacactcttc |
28185259 |
T |
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| Q |
139 |
tccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttc |
225 |
Q |
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| T |
28185258 |
ttcaagggtattctggtattagatttgaaatcttggaagctatcacaaagctcttgaacaacaatattaccccatgtttaccacttc |
28185172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 42610688 - 42610605
Alignment:
| Q |
95 |
cacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagc |
178 |
Q |
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| T |
42610688 |
cacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagc |
42610605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 40548770 - 40548956
Alignment:
| Q |
34 |
acagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacac |
133 |
Q |
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| T |
40548770 |
acaggtttttgaatgctggaatttttggtaatggaacagaacaatgccatacattgccacaaaatgcaacaagagctgcaatgttagtaagaatcaacac |
40548869 |
T |
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| Q |
134 |
actcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttacc |
220 |
Q |
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| T |
40548870 |
actccttcaaggctactcaggaatcagatatgaaatgctagaagccattacaaaacttctcaaccacaacattacaccatgtttacc |
40548956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 43215871 - 43215965
Alignment:
| Q |
99 |
gcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctcct |
193 |
Q |
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| T |
43215871 |
gcaacaagagcagctatgcttgtgagggttaatacccttctacaaggctattcaggcattagatttgaaatcttagaagctatcaccaagctcct |
43215965 |
T |
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