View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9770_high_1 (Length: 441)
Name: NF9770_high_1
Description: NF9770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9770_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 23496925 - 23496522
Alignment:
| Q |
19 |
ggatgctactcaggaatctgaattttttgtggattggcgagcgcaaaatcatggccttgcttgtggcgccggctcctcaggcgcgtcatcttctcctggc |
118 |
Q |
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| T |
23496925 |
ggatgctactcaggaatctgaattttttgtggattggcgagcgcaaaatcatggccttgcttgtggcgccggctcctcaggcgcgtcatcttctcctggc |
23496826 |
T |
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| Q |
119 |
gaagttgcgcatgttcccctttttcccattcttggagtcaggagcatcaagactcccctcccactgaatctacttatagcttggacgccgaccttacccc |
218 |
Q |
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| T |
23496825 |
gaagttgcgcatgttcccctttttcccattcttggagtcaggagcatcaagactcccctcccactgaatctacttatagcttggacgccgaccttacccc |
23496726 |
T |
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| Q |
219 |
ttttgagctacagttgaagtatgacttagagcaatttgtgcgttcgtttgagctgcagcaggacaaggatctggatgatccatccaagctaattaagaaa |
318 |
Q |
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| T |
23496725 |
ttctgagctacagttgaggtatgacttagagcaatttgtgcgttcgtttgagct---gcaggacaaggatctggatgatccatccaagctaattaagaaa |
23496629 |
T |
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| Q |
319 |
gtccaatttgtggagactaggatggtgattagagggaaggatgccgcccatcaaaggaggatttttggtgagtagtagcgatgcttgttcattgcttatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23496628 |
gtccaatttgtggagactaggatggtgattagagggaaggatgccgcccatcaaaggaggatttttggtgagtagtagcgatgcttgttcattgcttatt |
23496529 |
T |
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| Q |
419 |
ttgatgt |
425 |
Q |
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| T |
23496528 |
ttgatgt |
23496522 |
T |
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