View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9770_high_2 (Length: 356)
Name: NF9770_high_2
Description: NF9770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9770_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 31697064 - 31697397
Alignment:
| Q |
5 |
ttgaaatccaaaacgggcacaccgggcataggtctgccatttttagtatcggccaaatatttggcatcaaaaatctgctcaaggttacgaaaaagaagnn |
104 |
Q |
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| T |
31697064 |
ttgaaatccaaaacgggcacaccgggcataggtctgccatttttagtatcggccaaatatttggcatcgaaaatctgttcaaggttacgaaaaagaagaa |
31697163 |
T |
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| Q |
105 |
nnnnn-gtttacgattataacatgaacatcataaaaagaaataaaggaaacaggaaatagctagttgaggctgcatatgaaatttgaatacgtctacaat |
203 |
Q |
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| T |
31697164 |
aaaaaagtttacgattataacatgaacatcataaaaggaaataaaggaaacaggaaatagctagttgaggc---atatgaaatttgaatacgtctacaat |
31697260 |
T |
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| Q |
204 |
ggtacccagctcagaaatacttctgtatccacgatcctccactaaagtaggacactcttcatcttcaatatcatcaaaataaacaaacttgtcctcaatg |
303 |
Q |
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| T |
31697261 |
ggtacccagctcggaaatacttctgtgtccacgatcctccactaaagtaggacactcttcatcttcaatatcatcaaaataaacaaacttgtcctcaatg |
31697360 |
T |
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| Q |
304 |
gccttaagttttttctcctcttttgtaagaaccctat |
340 |
Q |
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| T |
31697361 |
gccttaagttttttctcctctttggtaagaaccctat |
31697397 |
T |
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