View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9770_low_1 (Length: 441)

Name: NF9770_low_1
Description: NF9770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9770_low_1
NF9770_low_1
[»] chr6 (25 HSPs)
chr6 (7-134)||(5249939-5250066)
chr6 (7-149)||(28145145-28145287)
chr6 (7-134)||(28145212-28145339)
chr6 (7-149)||(28145078-28145220)
chr6 (7-133)||(31113150-31113277)
chr6 (8-149)||(5249991-5250134)
chr6 (7-125)||(26620387-26620505)
chr6 (7-125)||(26726366-26726484)
chr6 (7-132)||(34255525-34255649)
chr6 (8-132)||(34255591-34255714)
chr6 (7-132)||(26726293-26726417)
chr6 (7-124)||(29934558-29934674)
chr6 (7-134)||(26726227-26726351)
chr6 (7-134)||(34255457-34255583)
chr6 (7-133)||(6406525-6406653)
chr6 (7-134)||(26620314-26620438)
chr6 (71-148)||(26620431-26620508)
chr6 (71-148)||(26726410-26726487)
chr6 (7-67)||(29934548-29934608)
chr6 (70-149)||(28145074-28145153)
chr6 (72-132)||(29934616-29934676)
chr6 (44-119)||(6406495-6406570)
chr6 (71-149)||(31113201-31113280)
chr6 (18-57)||(33296088-33296127)
chr6 (88-134)||(33296078-33296124)
[»] chr7 (36 HSPs)
chr7 (8-140)||(3078497-3078629)
chr7 (7-149)||(21958470-21958612)
chr7 (7-149)||(4341212-4341353)
chr7 (7-134)||(4341345-4341471)
chr7 (7-134)||(42785902-42786028)
chr7 (7-149)||(4341278-4341419)
chr7 (7-134)||(48478272-48478398)
chr7 (7-149)||(21958403-21958545)
chr7 (7-125)||(34456403-34456521)
chr7 (8-149)||(48478207-48478346)
chr7 (7-118)||(15695391-15695502)
chr7 (7-118)||(15702371-15702482)
chr7 (7-149)||(3081260-3081403)
chr7 (7-132)||(48477944-48478068)
chr7 (9-134)||(3081124-3081251)
chr7 (7-117)||(3081329-3081438)
chr7 (7-132)||(48478010-48478134)
chr7 (8-125)||(34456337-34456453)
chr7 (9-134)||(3078650-3078777)
chr7 (64-149)||(15695427-15695512)
chr7 (64-149)||(15702407-15702492)
chr7 (7-134)||(3081191-3081320)
chr7 (7-105)||(21958380-21958478)
chr7 (7-132)||(48478142-48478264)
chr7 (69-149)||(34456446-34456526)
chr7 (70-149)||(21958537-21958616)
chr7 (19-149)||(3078555-3078698)
chr7 (34-132)||(4341170-4341270)
chr7 (7-73)||(3078497-3078563)
chr7 (38-132)||(48477909-48478002)
chr7 (7-57)||(33615961-33616011)
chr7 (72-149)||(42785954-42786030)
chr7 (69-125)||(33615960-33616016)
chr7 (7-58)||(3081395-3081446)
chr7 (71-134)||(3078719-3078782)
chr7 (71-134)||(3081119-3081182)
[»] chr8 (21 HSPs)
chr8 (7-149)||(3165849-3165990)
chr8 (7-149)||(3165916-3166057)
chr8 (7-148)||(3165783-3165924)
chr8 (7-149)||(5557819-5557959)
chr8 (7-133)||(25336599-25336725)
chr8 (8-149)||(25336472-25336607)
chr8 (7-125)||(20810342-20810460)
chr8 (7-149)||(5557885-5558026)
chr8 (27-149)||(25336552-25336674)
chr8 (8-149)||(5557754-5557893)
chr8 (7-149)||(3165982-3166124)
chr8 (8-132)||(5557688-5557811)
chr8 (7-134)||(5557951-5558078)
chr8 (13-132)||(26082037-26082157)
chr8 (7-125)||(4844048-4844165)
chr8 (7-57)||(26082099-26082149)
chr8 (74-149)||(20810385-20810460)
chr8 (19-58)||(21542079-21542118)
chr8 (71-149)||(3166049-3166127)
chr8 (8-57)||(21542147-21542197)
chr8 (72-119)||(35859970-35860018)
[»] scaffold0046 (3 HSPs)
scaffold0046 (7-131)||(90477-90601)
scaffold0046 (7-126)||(90544-90664)
scaffold0046 (71-149)||(90474-90552)
[»] chr4 (36 HSPs)
chr4 (7-134)||(4852566-4852695)
chr4 (7-132)||(1506108-1506233)
chr4 (7-134)||(14190483-14190609)
chr4 (7-149)||(31663494-31663636)
chr4 (7-132)||(1505975-1506100)
chr4 (8-132)||(13713172-13713296)
chr4 (7-119)||(5578197-5578311)
chr4 (7-134)||(13713304-13713431)
chr4 (7-149)||(1506042-1506183)
chr4 (7-133)||(13713104-13713230)
chr4 (8-133)||(13713239-13713363)
chr4 (8-133)||(31663376-31663501)
chr4 (7-134)||(1506175-1506301)
chr4 (7-134)||(5599913-5600039)
chr4 (8-133)||(31663308-31663434)
chr4 (7-149)||(31663427-31663569)
chr4 (8-149)||(5599848-5599987)
chr4 (7-128)||(5909058-5909178)
chr4 (7-149)||(6735363-6735505)
chr4 (7-149)||(5578236-5578377)
chr4 (8-132)||(5599782-5599905)
chr4 (8-143)||(31663229-31663366)
chr4 (7-134)||(6735314-6735439)
chr4 (71-146)||(31663564-31663639)
chr4 (70-134)||(4852562-4852626)
chr4 (71-149)||(1505972-1506050)
chr4 (7-57)||(5578457-5578507)
chr4 (7-57)||(13702611-13702661)
chr4 (71-149)||(14190480-14190557)
chr4 (72-132)||(5909056-5909116)
chr4 (71-133)||(13713101-13713163)
chr4 (71-132)||(13702608-13702669)
chr4 (72-124)||(5578327-5578379)
chr4 (72-140)||(5578441-5578509)
chr4 (19-57)||(4852717-4852755)
chr4 (7-53)||(5578196-5578244)
[»] chr3 (41 HSPs)
chr3 (7-149)||(5938720-5938862)
chr3 (7-149)||(5938787-5938929)
chr3 (7-149)||(5938854-5938996)
chr3 (7-133)||(5938921-5939047)
chr3 (7-143)||(18111507-18111643)
chr3 (7-149)||(18111440-18111582)
chr3 (7-133)||(28034659-28034785)
chr3 (7-133)||(19441052-19441178)
chr3 (7-133)||(28034726-28034851)
chr3 (7-149)||(19384203-19384340)
chr3 (8-125)||(19479992-19480110)
chr3 (7-124)||(14521046-14521162)
chr3 (211-368)||(8578714-8578860)
chr3 (18-149)||(19384148-19384278)
chr3 (24-117)||(19384282-19384375)
chr3 (8-124)||(45227234-45227351)
chr3 (34-147)||(19441011-19441125)
chr3 (7-134)||(29897111-29897226)
chr3 (8-97)||(28034793-28034882)
chr3 (6-131)||(29897055-29897168)
chr3 (71-149)||(5938717-5938795)
chr3 (7-57)||(5835618-5835668)
chr3 (69-149)||(18111435-18111515)
chr3 (7-58)||(19384089-19384140)
chr3 (7-50)||(19384332-19384375)
chr3 (74-149)||(28034659-28034734)
chr3 (37-143)||(2746770-2746876)
chr3 (7-57)||(19479993-19480043)
chr3 (8-57)||(2746789-2746838)
chr3 (75-149)||(19480035-19480110)
chr3 (93-148)||(45227277-45227332)
chr3 (71-133)||(5835615-5835677)
chr3 (6-67)||(29897165-29897226)
chr3 (72-132)||(14521104-14521164)
chr3 (8-58)||(45227233-45227283)
chr3 (49-124)||(19384064-19384139)
chr3 (148-256)||(8553460-8553561)
chr3 (148-186)||(8584154-8584192)
chr3 (8-57)||(19480127-19480177)
chr3 (368-401)||(8578423-8578456)
chr3 (8-57)||(28034860-28034904)
[»] chr2 (13 HSPs)
chr2 (7-133)||(31314981-31315107)
chr2 (13-149)||(31347000-31347136)
chr2 (8-140)||(31315119-31315252)
chr2 (7-132)||(2743449-2743573)
chr2 (8-148)||(31346934-31347074)
chr2 (7-132)||(2743383-2743507)
chr2 (7-134)||(2743315-2743441)
chr2 (27-149)||(31346814-31346935)
chr2 (7-85)||(31346811-31346889)
chr2 (69-149)||(31314976-31315056)
chr2 (36-125)||(11951282-11951372)
chr2 (7-57)||(11951283-11951333)
chr2 (72-132)||(2743515-2743575)
[»] chr1 (21 HSPs)
chr1 (7-149)||(22207896-22208038)
chr1 (8-125)||(15088567-15088684)
chr1 (8-125)||(22207964-22208081)
chr1 (8-125)||(22211175-22211292)
chr1 (7-149)||(51844347-51844489)
chr1 (8-134)||(22207625-22207751)
chr1 (7-125)||(22208030-22208148)
chr1 (7-134)||(22207760-22207887)
chr1 (7-125)||(51844414-51844532)
chr1 (8-133)||(22207828-22207955)
chr1 (7-134)||(14114754-14114883)
chr1 (8-149)||(51844281-51844422)
chr1 (8-133)||(22207692-22207819)
chr1 (7-134)||(14114823-14114954)
chr1 (7-134)||(14114685-14114814)
chr1 (75-149)||(15088567-15088641)
chr1 (75-149)||(22211175-22211249)
chr1 (7-57)||(15088633-15088683)
chr1 (7-57)||(22211241-22211291)
chr1 (75-149)||(22207625-22207699)
chr1 (70-134)||(14114894-14114958)
[»] scaffold0927 (3 HSPs)
scaffold0927 (8-149)||(3560-3701)
scaffold0927 (7-118)||(3626-3737)
scaffold0927 (34-149)||(3518-3634)
[»] chr5 (5 HSPs)
chr5 (8-149)||(41528441-41528580)
chr5 (7-134)||(41528572-41528698)
chr5 (7-149)||(41528506-41528646)
chr5 (7-140)||(37368910-37369044)
chr5 (34-143)||(37368975-37369087)
[»] scaffold0043 (2 HSPs)
scaffold0043 (7-134)||(69695-69822)
scaffold0043 (7-149)||(69747-69889)
[»] scaffold0060 (2 HSPs)
scaffold0060 (7-133)||(39927-40053)
scaffold0060 (71-125)||(40002-40056)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 5250066 - 5249939
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||| |||||||||    
T  5250066 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagttttcgcatttgttactatgagccgtacctcatacactacatta 5249967  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| |||||||| |||||    
T  5249966 tctcttcgttgtagcaaacagaattttt 5249939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 28145145 - 28145287
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||  || ||||||||||||||||||| ||  |||||| ||||||||    
T  28145145 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtcttcgcatttgttactatgagccgtacatcataggctacatta 28145244  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| ||| ||||||||| |||||||||    
T  28145245 tctcttcgttgtagcaaacggagattttgcattcgttactatg 28145287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 28145212 - 28145339
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||| || ||||||||||||||||    
T  28145212 gttactatgagccgtacatcataggctacattatctcttcgttgtagcaaacggagattttgcattcgttactatgagccgtacctcatagactacatta 28145311  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||| ||||    
T  28145312 tctcttcgttgtagcaaacggagatttt 28145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 28145078 - 28145220
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||  ||| |||  |||||||||||||||||| || ||||||| ||||||||    
T  28145078 gttactatgagctgtacctcataggctacattatctctttgttgtagcaaacggagttttcacatttgttactatgagccgtacctcataggctacatta 28145177  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| |||| || |||||||||||||||    
T  28145178 tctcttcgttgtagcaaacggagtcttcgcatttgttactatg 28145220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 31113277 - 31113150
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttg-catttgttactatgagccatatctcatagactacatt 105  Q
    |||| |||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||| ||||||| |||||||    
T  31113277 gttaatatgagtcatacctcataagctacattatctcttcgttgtagcaaatagaggttttcacatttgttactatgagctatacctcataggctacatt 31113178  T
Q  106 atctcttcgttgtaacaaacagagtttt 133  Q
    |||||||||||||| |||||||||||||    
T  31113177 atctcttcgttgtagcaaacagagtttt 31113150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 5250134 - 5249991
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttg-cattt-gttactatgagccatatctcatagactacatt 105  Q
    ||||||||||  ||||||||||||||||||||| ||||||||||||||||| ||| ||||  || || ||||||||||||| || ||||||| |||||||    
T  5250134 ttactatgagttgtacctcataggctacattatttcttcgttgtagcaaatggagtttttctcagttcgttactatgagccgtacctcataggctacatt 5250035  T
Q  106 atctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||| |||| |||||||| |||||||||||||||    
T  5250034 atctcttcgttgtagcaaatagagttttcgcatttgttactatg 5249991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 26620505 - 26620387
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||| ||||| |||||||| |||| || ||||||| ||||||||    
T  26620505 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagttttcgcattcgttactataagccgtacctcataggctacatta 26620406  T
Q  107 tctcttcgttgtaacaaac 125  Q
    ||||||||||||| |||||    
T  26620405 tctcttcgttgtagcaaac 26620387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 26726484 - 26726366
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||| ||||| |||||||| |||| || ||||||| ||||||||    
T  26726484 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagttttcgcattcgttactataagccgtacctcataggctacatta 26726385  T
Q  107 tctcttcgttgtaacaaac 125  Q
    ||||||||||||| |||||    
T  26726384 tctcttcgttgtagcaaac 26726366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 34255649 - 34255525
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||  ||||||||||| |||||| |  ||||||| ||||||||    
T  34255649 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacagag-tttcacatttgttactttgagccgttcctcataggctacatta 34255551  T
Q  107 tctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||| ||||| ||||||    
T  34255550 tctcttcgttgtagcaaacggagttt 34255525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 34255714 - 34255591
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| |||||||||    
T  34255714 ttactatgagtcgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacattat 34255616  T
Q  108 ctcttcgttgtaacaaacagagttt 132  Q
    |||||||||||| ||||||||||||    
T  34255615 ctcttcgttgtagcaaacagagttt 34255591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 26726417 - 26726293
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||   || |||  |||| ||||||||||||| || ||||||  ||||||||    
T  26726417 gttactataagccgtacctcataggctacattatctcttcgttgtagcaaacgaag-tttcacattcgttactatgagccgtacctcataagctacatta 26726319  T
Q  107 tctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||| ||||| ||||||    
T  26726318 tctcttcgttgtagcaaacggagttt 26726293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 29934674 - 29934558
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||  |  ||||||| ||||||||    
T  29934674 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagcggttcctcataggctacatta 29934576  T
Q  107 tctcttcgttgtaacaaa 124  Q
    ||||||||||||| ||||    
T  29934575 tctcttcgttgtagcaaa 29934558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 26726351 - 26726227
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| || |||  || ||||||||    
T  26726351 gttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgtacctc--aggctacatta 26726255  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||||||||    
T  26726254 tctcttcgttgtagcaaacggagttttt 26726227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 34255583 - 34255457
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| ||||||||    
T  34255583 gttactttgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacatta 34255485  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||| ||||    
T  34255484 tctcttcgttgtagcaaacggagatttt 34255457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 6406525 - 6406653
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgta--gcaaatagagcttttgcatttgttactatgagccatatctcatagactacat 104  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||  |||||  ||  |||  ||||||||| |||||| | || ||||||| ||||||    
T  6406525 gttactatgagccgtacctcataggctacattatttcttcattgtatagcaaacggatttttcacatttgttattatgagtcgtacctcataggctacat 6406624  T
Q  105 tatctcttcgttgtaacaaacagagtttt 133  Q
    ||||||||||||||| |||||||||||||    
T  6406625 tatctcttcgttgtagcaaacagagtttt 6406653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 26620438 - 26620314
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||   || |||  |||| ||||||||||||| || ||||  | ||||||||    
T  26620438 gttactataagccgtacctcataggctacattatctcttcgttgtagcaaacgaag-tttcacattcgttactatgagccgtacctca--ggctacatta 26620342  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||||||||    
T  26620341 tctcttcgttgtagcaaacggagttttt 26620314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 26620508 - 26620431
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactat 148  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||| ||||| ||||||| ||||| ||||||||    
T  26620508 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagttttcgcattcgttactat 26620431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 26726487 - 26726410
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactat 148  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||| ||||| ||||||| ||||| ||||||||    
T  26726487 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagttttcgcattcgttactat 26726410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 29934608 - 29934548
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagctttt 67  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| ||| ||||    
T  29934608 gttactatgagcggttcctcataggctacattatctcttcgttgtagcaaatggagatttt 29934548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 28145074 - 28145153
Alignment:
Q  70 atttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||||||  || ||||||| |||||||||||||| |||||| ||||| |||||||  ||||||||||||||    
T  28145074 atttgttactatgagctgtacctcataggctacattatctctttgttgtagcaaacggagttttcacatttgttactatg 28145153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 29934676 - 29934616
Alignment:
Q  72 ttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||||| ||||| ||||||    
T  29934676 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 29934616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 6406495 - 6406570
Alignment:
Q  44 ttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattatctcttcgttgta 119  Q
    |||||||||||||| || | ||| ||||||||||||||||||| || ||||||| ||||||||| ||||| |||||    
T  6406495 ttcgttgtagcaaagagtgttttcgcatttgttactatgagccgtacctcataggctacattatttcttcattgta 6406570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 31113280 - 31113201
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacaga-gtttttgcatttgttactatg 149  Q
    ||||||| |||||| |||| ||||||  ||||||||||||||||||||| |||| ||| |||||  ||||||||||||||    
T  31113280 tttgttaatatgagtcatacctcataagctacattatctcttcgttgtagcaaatagaggttttcacatttgttactatg 31113201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 33296127 - 33296088
Alignment:
Q  18 ccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  33296127 ccgtatctcataggctacattatctcttcgttgtagcaaa 33296088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 33296124 - 33296078
Alignment:
Q  88 tatctcatagactacattatctcttcgttgtaacaaacagagttttt 134  Q
    |||||||||| ||||||||||||||||||||| ||||| || |||||    
T  33296124 tatctcataggctacattatctcttcgttgtagcaaactgatttttt 33296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 3078629 - 3078497
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||| ||||||||||| | || |||||||||||||||||    
T  3078629 ttactatgagccgtacctcataggctacattatctattcgttgtagcaaacggagtttttgcattcgttactatgagtcgtacctcatagactacattat 3078530  T
Q  108 ctcttcgttgtaacaaacagagtttttgcattt 140  Q
    ||||||||||||||||||| |||||||||||||    
T  3078529 ctcttcgttgtaacaaacaaagtttttgcattt 3078497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 21958612 - 21958470
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||  ||| ||| |||||||||||||||||||||| ||||||| ||||||||    
T  21958612 gttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacggagttttcgcatttgttactatgagccatacctcataggctacatta 21958513  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| || | || |||||||||||||||    
T  21958512 tctcttcgttgtagcaaacggaatcttcgcatttgttactatg 21958470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 4341212 - 4341353
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| ||||||||    
T  4341212 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacatta 4341310  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| |||||||  |||| |||||||||    
T  4341311 tctcttcgttgtagcaaacggagttttcacattcgttactatg 4341353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 4341345 - 4341471
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| ||| ||||| ||||||||||||| || ||||||| ||||||||    
T  4341345 gttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggag-tttcgcattcgttactatgagccgtacctcataggctacatta 4341443  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||| ||||    
T  4341444 tctcttcgttgtagcaaacggagatttt 4341471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 42786028 - 42785902
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| |||  |||||||||||||||||| |  ||||||| ||||||||    
T  42786028 gttactatcagccgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatgagccgttcctcataggctacatta 42785930  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||||||||    
T  42785929 tctcttcgttgtagcaaacggagttttt 42785902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 4341278 - 4341419
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| || ||||||  ||||||||    
T  4341278 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttcacattcgttactatgagccgtacctcataagctacatta 4341377  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| ||| ||| ||||| |||||||||    
T  4341378 tctcttcgttgtagcaaacggag-tttcgcattcgttactatg 4341419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 48478272 - 48478398
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||||||||||||||||| |   |||||| ||||||||    
T  48478272 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatgagccgttcatcataggctacatta 48478370  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||||||||    
T  48478371 tctcttcgttgtagcaaacggagttttt 48478398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 21958545 - 21958403
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||  ||   || ||||||||||||||||||| || |||||||  |||||||    
T  21958545 gttactatgagccatacctcataggctacattatctcttcgttgtagcaaacggaatcttcgcatttgttactatgagccgtacctcataggttacatta 21958446  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||| ||| || ||||| |||| |  |||||||||||||||    
T  21958445 tctctttgttttagcaaacggagtctacgcatttgttactatg 21958403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 34456521 - 34456403
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||  ||| |||  ||||| |||||||||||| || ||||||| ||||||||    
T  34456521 gttactatgagccgtacttcatagactacattatctcttcgttgtagcaaacggagttttcacattttttactatgagccgtacctcataggctacatta 34456422  T
Q  107 tctcttcgttgtaacaaac 125  Q
    ||||||||||||| |||||    
T  34456421 tctcttcgttgtagcaaac 34456403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 48478207 - 48478346
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| |||||||||    
T  48478207 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcccattcgttactatgagccgttcctcataggctacattat 48478305  T
Q  108 ctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||| ||||| ||| |||  ||||||||||||||    
T  48478306 ctcttcgttgtagcaaacggag-tttcacatttgttactatg 48478346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 15695502 - 15695391
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||||||||  ||| ||| ||||||||||||||||||  || ||||||| ||||||||    
T  15695502 gttactataagccttacctcataggctacattatctcttagttgtagcaaacggagttttcgcatttgttactatgagctgtacctcataggctacatta 15695403  T
Q  107 tctcttcgttgt 118  Q
    ||||||||||||    
T  15695402 tctcttcgttgt 15695391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 15702482 - 15702371
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||||||||  ||| ||| ||||||||||||||||||  || ||||||| ||||||||    
T  15702482 gttactataagccttacctcataggctacattatctcttagttgtagcaaacggagttttcgcatttgttactatgagctgtacctcataggctacatta 15702383  T
Q  107 tctcttcgttgt 118  Q
    ||||||||||||    
T  15702382 tctcttcgttgt 15702371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 3081260 - 3081403
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttt--tgcatttgttactatgagccatatctcatagactacat 104  Q
    ||||||||||| |||||| |||||||| ||||||||| || |||||||||| |||| |||  |  ||||||||||||||| | || ||||||| ||||||    
T  3081260 gttactatgagtcgtaccccataggctgcattatctcatcattgtagcaaacagagtttttctcgatttgttactatgagtcgtacctcataggctacat 3081359  T
Q  105 tatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||    
T  3081360 tatct-ttcgttgtagcaaacggagtttttgcatttgttactatg 3081403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 48477944 - 48478068
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| |||||||||| || |  ||||||| ||||||||    
T  48477944 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgacccgttcctcataggctacatta 48478042  T
Q  107 tctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||| ||||| ||||||    
T  48478043 tctcttcgttgtagcaaacggagttt 48478068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 3081124 - 3081251
Alignment:
Q  9 tactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttt--tgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||  |  ||||||||||||||| | || ||||||| || |||||    
T  3081124 tactatgagtcgtacctcataggctacgttatctcttcgttgtagcaaatagagtttttctcgatttgttactatgagtcgtacctcataggctgcatta 3081223  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    |||| |||||||| |||||| |||||||    
T  3081224 tctcatcgttgtagcaaacaaagttttt 3081251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 3081329 - 3081438
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||| | || ||||| | ||||||||    
T  3081329 gttactatgagtcgtacctcataggctacattatct-ttcgttgtagcaaacggagtttttgcatttgttactatgagtcgtacctcattggctacatta 3081427  T
Q  107 tctcttcgttg 117  Q
    ||||| |||||    
T  3081428 tctctccgttg 3081438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 48478010 - 48478134
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| |||||||||| || |  ||||||| ||||||||    
T  48478010 gttactatgacccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgacccgttcctcataggctacatta 48478108  T
Q  107 tctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||| ||||| ||||||    
T  48478109 tctcttcgttgtagcaaacggagttt 48478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 34456453 - 34456337
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgtt--actatgagccatatctcatagactacatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |   |||  ||||| ||  |||||||||| || ||||||| |||||||    
T  34456453 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg---tttcacattttttttactatgagccgtacctcataggctacatt 34456357  T
Q  106 atctcttcgttgtaacaaac 125  Q
    |||||||||||||| |||||    
T  34456356 atctcttcgttgtagcaaac 34456337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 3078777 - 3078650
Alignment:
Q  9 tactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttt--tgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| | || |||  |  |||||||||| | || | || ||||||| ||||||||    
T  3078777 tactatgagccgtacctcataagctacgttatctcttcgttgtagcaaacaaagtttttcttgatttgttactgtaagtcgtacctcataggctacatta 3078678  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    |||| |||||||| ||||||||||||||    
T  3078677 tctcatcgttgtagcaaacagagttttt 3078650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 15695512 - 15695427
Alignment:
Q  64 ttttgcatttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||||||| |||| || ||||||| |||||||||||||| |||||| ||||| ||||||| |||||||||||||||    
T  15695512 ttttgcatttgttactataagccttacctcataggctacattatctcttagttgtagcaaacggagttttcgcatttgttactatg 15695427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 15702492 - 15702407
Alignment:
Q  64 ttttgcatttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||||||| |||| || ||||||| |||||||||||||| |||||| ||||| ||||||| |||||||||||||||    
T  15702492 ttttgcatttgttactataagccttacctcataggctacattatctcttagttgtagcaaacggagttttcgcatttgttactatg 15702407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 3081191 - 3081320
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttt--tgcatttgttactatgagccatatctcatagactacat 104  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||||| | || |||  |  ||||||||||||||| | || | ||||| || |||    
T  3081191 gttactatgagtcgtacctcataggctgcattatctcatcgttgtagcaaacaaagtttttctcgatttgttactatgagtcgtaccccataggctgcat 3081290  T
Q  105 tatctcttcgttgtaacaaacagagttttt 134  Q
    |||||| || ||||| ||||||||||||||    
T  3081291 tatctcatcattgtagcaaacagagttttt 3081320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 21958478 - 21958380
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatt 105  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||||  |||  |  ||||||||||||||||||| || ||||||| |||||||    
T  21958478 gttactatgagccgtacctcataggttacattatctctttgttttagcaaacggagtctacgcatttgttactatgagccgtacctcataggctacatt 21958380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 48478142 - 48478264
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||| ||||||||||||||||  ||||||||||||  ||| |||  ||||  |||||||||||| |  ||||||| ||||||||    
T  48478142 gttactatgagccgttcctcgtaggctacattatctc--cgttgtagcaaacggag-tttcacattcattactatgagccgttcctcataggctacatta 48478238  T
Q  107 tctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||| ||||| ||||||    
T  48478239 tctcttcgttgtagcaaacggagttt 48478264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 34456526 - 34456446
Alignment:
Q  69 catttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  34456526 catttgttactatgagccgtacttcatagactacattatctcttcgttgtagcaaacggagttttcacattttttactatg 34456446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 21958616 - 21958537
Alignment:
Q  70 atttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||||| | || ||||||| ||| ||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  21958616 atttgttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacggagttttcgcatttgttactatg 21958537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 3078698 - 3078555
Alignment:
Q  19 cgtacctcataggctacattatctcttcgttgtagcaaatagagcttt--tgcatttg-----------ttactatgagccatatctcatagactacatt 105  Q
    ||||||||||||||||||||||||| ||||||||||||| |||| |||  |  |||||           |||||||||||| || ||||||| |||||||    
T  3078698 cgtacctcataggctacattatctcatcgttgtagcaaacagagtttttctcgatttgttactatgagcttactatgagccgtacctcataggctacatt 3078599  T
Q  106 atctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||| ||||||||| ||||| ||||||||||||| |||||||||    
T  3078598 atctattcgttgtagcaaacggagtttttgcattcgttactatg 3078555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 4341170 - 4341270
Alignment:
Q  34 acattatctcttcgttgtagcaaatagagcttttgc--atttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtt 131  Q
    ||||| |||||||||||| |||||| ||| ||||    ||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||| |||||    
T  4341170 acattgtctcttcgttgtggcaaatggagtttttctcaatttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtt 4341269  T
Q  132 t 132  Q
    |    
T  4341270 t 4341270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 3078563 - 3078497
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcattt 73  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||| |||| | || ||||||||||    
T  3078563 gttactatgagtcgtacctcatagactacattatctcttcgttgtaacaaacaaagtttttgcattt 3078497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 48477909 - 48478002
Alignment:
Q  38 tatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| ||||||||||||||||||||| ||||| ||||||    
T  48477909 tatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 33616011 - 33615961
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||||||    
T  33616011 gttaccatgagccgtacctcatagactacattgtctcttcgttgtagcaaa 33615961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 42786030 - 42785954
Alignment:
Q  72 ttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||| |||| || ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  42786030 ttgttactatcagccgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 42785954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 33616016 - 33615960
Alignment:
Q  69 catttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaac 125  Q
    |||||||||| ||||||| || ||||||||||||||| ||||||||||||| |||||    
T  33616016 catttgttaccatgagccgtacctcatagactacattgtctcttcgttgtagcaaac 33615960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 3081395 - 3081446
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaat 58  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||| |||||||    
T  3081395 gttactatgagtcgtacctcattggctacattatctctccgttgcagcaaat 3081446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 3078782 - 3078719
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttttt 134  Q
    |||| ||||||||||| || ||||||  |||| |||||||||||||||| |||||| |||||||    
T  3078782 tttgatactatgagccgtacctcataagctacgttatctcttcgttgtagcaaacaaagttttt 3078719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 3081119 - 3081182
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttttt 134  Q
    |||| ||||||||| | || ||||||| |||| |||||||||||||||| |||| |||||||||    
T  3081119 tttgatactatgagtcgtacctcataggctacgttatctcttcgttgtagcaaatagagttttt 3081182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 3165990 - 3165849
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||| ||||||| ||||||||||||| | || ||||||  ||||||||    
T  3165990 gttactatgagtcgtacctcataggctgcattatctcttcgt-gtagcaaacagagtttttgcaattgttactatgagacgtacctcataagctacatta 3165892  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  3165891 tctcttcgttgtagcaaacagagtttttgcacttgttactatg 3165849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 3166057 - 3165916
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||| ||| ||||||||||||| | || ||||||| || |||||    
T  3166057 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaatggaattttcgcacttgttactatgagtcgtacctcataggctgcatta 3165958  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||| |||| ||||||||||||||||| |||||||||||    
T  3165957 tctcttcg-tgtagcaaacagagtttttgcaattgttactatg 3165916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 3165924 - 3165783
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| | || ||||||  ||||||||    
T  3165924 gttactatgagacgtacctcataagctacattatctcttcgttgtagcaaacagagtttttgcacttgttactatgagacgtacctcataagctacatta 3165825  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactat 148  Q
    ||||||||||||| |||||| ||||||  || ||||||||||    
T  3165824 tctcttcgttgtagcaaacaaagttttcacacttgttactat 3165783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 5557819 - 5557959
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||||||||||||||||| |  ||||||| ||||||||    
T  5557819 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatgagccgttcctcataggctacatta 5557917  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||||||| |||  ||||||||||||||    
T  5557918 tctcttcgttgtagcaaacagag-tttcacatttgttactatg 5557959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 25336599 - 25336725
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||| || ||||||| ||||||||    
T  25336599 gttactatgagttgtacctcataggctacattatctcttcgttgtagcaaacagagttttcacatttgttactatgagccgtacctcataggctacatta 25336698  T
Q  107 tctcttcgttgtaacaaacagagtttt 133  Q
    ||| ||||||||| ||||| |||||||    
T  25336699 tcttttcgttgtagcaaacggagtttt 25336725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 25336472 - 25336607
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||| |     |||| |||||||||    
T  25336472 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaat-gaagtttcgcatttgttactatgagccgt-----ataggctacattat 25336565  T
Q  108 ctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||| ||||| |||||||  ||||||||||||||    
T  25336566 ctcttcgttgtagcaaacggagttttcacatttgttactatg 25336607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 20810460 - 20810342
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||  |||  |||| |||||||||| ||||| ||||||| ||||||||    
T  20810460 gttactatgacccgtacctcataggctacattatctcttcgttgtagcaaacagatatttcacattcgttactatgaaccatacctcataggctacatta 20810361  T
Q  107 tctcttcgttgtaacaaac 125  Q
    ||||||||||||| |||||    
T  20810360 tctcttcgttgtagcaaac 20810342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 5557885 - 5558026
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||| |  ||||||| ||||||||    
T  5557885 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacagag-tttcacatttgttactatgagccgttcctcataggctacatta 5557983  T
Q  107 tctc-ttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||| ||||||||| ||||| ||| |||  ||||||||||||||    
T  5557984 tctctttcgttgtagcaaacggag-tttcacatttgttactatg 5558026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 25336552 - 25336674
Alignment:
Q  27 ataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaaca 126  Q
    |||||||||||||||||||||||||||||||  ||| |||  ||||||||||||||||   || ||||||| ||||||||||||||||||||| ||||||    
T  25336552 ataggctacattatctcttcgttgtagcaaacggagttttcacatttgttactatgagttgtacctcataggctacattatctcttcgttgtagcaaaca 25336651  T
Q  127 gagtttttgcatttgttactatg 149  Q
    |||||||  ||||||||||||||    
T  25336652 gagttttcacatttgttactatg 25336674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 5557754 - 5557893
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| |||||||||    
T  5557754 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacattat 5557852  T
Q  108 ctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||| ||||| ||| |||  ||||||||||||||    
T  5557853 ctcttcgttgtagcaaacggag-tttcacatttgttactatg 5557893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 3166124 - 3165982
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||   | | |||  || ||||||||||||| | || ||||||| ||||||||    
T  3166124 gttactatgagccgtaccttataggctacattatctcttcgttgtagcaagcggtgttttcacacttgttactatgagtcgtacctcataggctacatta 3166025  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||  || |||| ||| |||||||||||    
T  3166024 tctcttcgttgtagcaaatggaattttcgcacttgttactatg 3165982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 5557688 - 5557811
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||  ||| |||  ||||  |||||||||||| |  ||||||| |||||||||    
T  5557688 ttactatgagctgtaccttataggctacattatctcttcgttgtagcaaacggag-tttcacattcattactatgagccgttcctcataggctacattat 5557786  T
Q  108 ctcttcgttgtaacaaacagagttt 132  Q
    |||||||||||| ||||| ||||||    
T  5557787 ctcttcgttgtagcaaacggagttt 5557811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 5557951 - 5558078
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctctt-cgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatt 105  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||  ||| |||  |||||||||||||||| | |  ||||| | |||||||    
T  5557951 gttactatgagccgttcctcataggctacattatctctttcgttgtagcaaacggag-tttcacatttgttactatgagtcgttcctcatcggctacatt 5558049  T
Q  106 atctcttcgttgtaacaaacagagttttt 134  Q
    |||||||||||||| ||||| ||||||||    
T  5558050 atctcttcgttgtagcaaacggagttttt 5558078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 26082037 - 26082157
Alignment:
Q  13 atgagccgtacctcataggctacattatctcttcgttgtagcaaatagagc-ttttgcatttgttactatgagccatatctcatagactacattatctct 111  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  |  | |||||||||||||| |||||| | || ||||||| |||||||||||||    
T  26082037 atgagccgtacctcataggctacattatcacttcgttgtagcaaacggttctttttgcatttgttaatatgagtcgtacctcataggctacattatctct 26082136  T
Q  112 tcgttgtaacaaacagagttt 132  Q
     ||||||| ||||| ||||||    
T  26082137 ccgttgtagcaaacggagttt 26082157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 4844165 - 4844048
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||  |||||||  |||||||||  ||||||||||  | |  ||  ||||||||| |||||||  || ||||||| ||||||||    
T  4844165 gttactatgagccgtaccttgtaggctatgttatctcttttttgtagcaaacggtgtgttcccatttgttattatgagcg-tacctcataggctacatta 4844067  T
Q  107 tctcttcgttgtaacaaac 125  Q
    ||| |||||||||||||||    
T  4844066 tctattcgttgtaacaaac 4844048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 26082099 - 26082149
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    |||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  26082099 gttaatatgagtcgtacctcataggctacattatctctccgttgtagcaaa 26082149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 20810460 - 20810385
Alignment:
Q  74 gttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||| || || ||||||| ||||||||||||||||||||| ||||||||  |||  |||| |||||||||    
T  20810460 gttactatgacccgtacctcataggctacattatctcttcgttgtagcaaacagatatttcacattcgttactatg 20810385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 21542118 - 21542079
Alignment:
Q  19 cgtacctcataggctacattatctcttcgttgtagcaaat 58  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  21542118 cgtacctcataggctacattatctcttcgttgtagaaaat 21542079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 3166127 - 3166049
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||||| || || |||| ||||||||||||||||||||| ||| | | |||||  || |||||||||||    
T  3166127 tttgttactatgagccgtaccttataggctacattatctcttcgttgtagcaagcggtgttttcacacttgttactatg 3166049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 21542197 - 21542147
Alignment:
Q  8 ttactatgagcc-gtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    |||||||||||  |||||||||| ||||||||||||||| |||||||||||    
T  21542197 ttactatgagcatgtacctcataagctacattatctctttgttgtagcaaa 21542147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 35859970 - 35860018
Alignment:
Q  72 ttgttactatgagc-catatctcatagactacattatctcttcgttgta 119  Q
    |||||||||||||| |||| ||||||  |||||||||||||||||||||    
T  35859970 ttgttactatgagcacataactcatatgctacattatctcttcgttgta 35860018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 90477 - 90601
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||| || ||||||| | | ||||    
T  90477 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacaaagttttcgcatttgttactatgagccgtacctcataggcaaaatta 90576  T
Q  107 tctcttcgttgtaacaaacagagtt 131  Q
    ||||||||||||| |||||||||||    
T  90577 tctcttcgttgtagcaaacagagtt 90601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 90544 - 90664
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagag--cttttgcatttgttactatgagccatatctcatagactacat 104  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||| ||||  ||| |  ||||||||||||||||| || ||||||| ||||||    
T  90544 gttactatgagccgtacctcataggcaaaattatctcttcgttgtagcaaacagagttcttctcaatttgttactatgagccgta-ctcataggctacat 90642  T
Q  105 tatctcttcgttgtaacaaaca 126  Q
    ||||| ||||||||| ||||||    
T  90643 tatctattcgttgtagcaaaca 90664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 90474 - 90552
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||    
T  90474 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacaaagttttcgcatttgttactatg 90552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 4852566 - 4852695
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttt--tgcatttgttactatgagccatatctcatagactacat 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||  |  ||||||||||||||||| || ||||||| ||||||    
T  4852566 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttttctcaatttgttactatgagccgtacctcataggctacat 4852665  T
Q  105 tatctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||||| ||||||||||||||    
T  4852666 tatctcttcgttgtagcaaacagagttttt 4852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 1506108 - 1506233
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  ||| |||  |||| |||||||||||||||| ||||||| ||||||||    
T  1506108 gttactatgagccgtacctcataggctatattatctcttcgttgtagcaaacggagttttcacattcgttactatgagccatacctcataggctacatta 1506207  T
Q  107 tctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||| ||||| ||||||    
T  1506208 tctcttcgttgtagcaaacggagttt 1506233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 14190483 - 14190609
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||  |||||||||||||||||| || ||| ||| ||||||||    
T  14190483 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatgagccgtacctcgtaggctacatta 14190581  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||||||| ||||    
T  14190582 tctcttcgttgtagcaaacagagatttt 14190609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 31663636 - 31663494
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||  ||||||||||| |||||| || || |||| ||||||||    
T  31663636 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagttttcacatttgttactttgagccgtaccttataggctacatta 31663537  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||| ||||| ||||| |||||||  ||||| ||||||||    
T  31663536 tctcttcattgtagcaaacggagttttcacattttttactatg 31663494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 1505975 - 1506100
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| || ||||||| ||||||||    
T  1505975 gttactatgagccgtacttcataggctacattatctcttcgttgtagcaaacggagttttcacattcgttactatgagccttacctcataggctacatta 1506074  T
Q  107 tctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||| ||||| ||||||    
T  1506075 tctcttcgttgtagcaaactgagttt 1506100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 13713172 - 13713296
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||   |||| |||||||||| | || ||||||| |||||||||    
T  13713172 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacagagttttcaaatttattactatgagtcgtacctcataggctacattat 13713271  T
Q  108 ctcttcgttgtaacaaacagagttt 132  Q
    |||||||| ||| ||||||||||||    
T  13713272 ctcttcgtcgtagcaaacagagttt 13713296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 5578311 - 5578197
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacat-- 104  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||| ||||||||||||||      
T  5578311 gttactataagtcgtacctcataggctacattatctcttcgttgtagcaaacagagatttcgcattcgttactatgagccatacctcatagactacatta 5578212  T
Q  105 tatctcttcgttgta 119  Q
    |||||||||||||||    
T  5578211 tatctcttcgttgta 5578197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 13713304 - 13713431
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | ||| |||| |||||| |||| |||||||  |||||||    
T  13713304 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttcgaattcgttattatgagtcatacctcataggatacatta 13713403  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||||||||    
T  13713404 tctcttcgttgtagcaaacggagttttt 13713431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 1506042 - 1506183
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| || ||||||| ||| ||||    
T  1506042 gttactatgagccttacctcataggctacattatctcttcgttgtagcaaactgag-tttcacattcgttactatgagccgtacctcataggctatatta 1506140  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| |||||||  |||| |||||||||    
T  1506141 tctcttcgttgtagcaaacggagttttcacattcgttactatg 1506183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 13713104 - 13713230
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||  ||| |||  ||||  |||||||||||| || ||||||| ||||||||    
T  13713104 gttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacggagttttcacattcattactatgagccgtacctcataggctacatta 13713203  T
Q  107 tctcttcgttgtaacaaacagagtttt 133  Q
    ||||||||||||| |||||||||||||    
T  13713204 tctcttcgttgtagcaaacagagtttt 13713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 13713239 - 13713363
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||| |||| |||  |||| ||||||||||||| || ||||||| |||||||||    
T  13713239 ttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaacagag-tttcacattcgttactatgagccgtacctcataggctacattat 13713337  T
Q  108 ctcttcgttgtaacaaacagagtttt 133  Q
    |||||||||||| ||||| |||||||    
T  13713338 ctcttcgttgtagcaaacggagtttt 13713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 31663501 - 31663376
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||  ||| |||  ||||| |||||||||||| |||||||||| |||||||||    
T  31663501 ttactatgagctacacctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatgagccgtatctcataggctacattat 31663402  T
Q  108 ctcttcgttgtaacaaacagagtttt 133  Q
    |||||||||||| ||||| |||||||    
T  31663401 ctcttcgttgtagcaaacggagtttt 31663376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 1506175 - 1506301
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| || ||||||| ||||||||    
T  1506175 gttactatgagccatacctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgtacctcataggctacatta 1506273  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||  |||||| |||||||    
T  1506274 tctcttcgttgttgcaaacatagttttt 1506301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 5599913 - 5600039
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||||||||||||||||| |   |||||| ||||||||    
T  5599913 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatgagccgttcatcataggctacatta 5600011  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||||||||    
T  5600012 tctcttcgttgtagcaaacggagttttt 5600039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 31663434 - 31663308
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgtt-actatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| |||  ||||| || |||||||||| || ||||||| ||||||||    
T  31663434 ttactatgagccgtatctcataggctacattatctcttcgttgtagcaaacggagttttcacatttttttactatgagccgtacctcataggctacatta 31663335  T
Q  107 tctcttcgttgtaacaaacagagtttt 133  Q
    ||||||||||||| ||||| |||||||    
T  31663334 tctcttcgttgtagcaaacggagtttt 31663308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 31663569 - 31663427
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||||||||  ||| |||  ||||| ||||||||||| | | ||||||| ||||||||    
T  31663569 gttactttgagccgtaccttataggctacattatctcttcattgtagcaaacggagttttcacattttttactatgagctacacctcataggctacatta 31663470  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| |||||||  ||||| ||||||||    
T  31663469 tctcttcgttgtagcaaacggagttttcacattttttactatg 31663427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 5599848 - 5599987
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| |||||||||    
T  5599848 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacattat 5599946  T
Q  108 ctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||| ||||| ||| |||  ||||||||||||||    
T  5599947 ctcttcgttgtagcaaacggag-tttcacatttgttactatg 5599987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 5909058 - 5909178
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||| | |  ||||||| ||||||||    
T  5909058 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagtcgttcctcataggctacatta 5909156  T
Q  107 tctcttcgttgtaacaaacaga 128  Q
    ||||||||||||| ||||||||    
T  5909157 tctcttcgttgtagcaaacaga 5909178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 6735505 - 6735363
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| ||||| ||||||| ||  ||||||||||||||||| ||| |  | ||||||||||||||||||||| | |||||||||  ||||||||    
T  6735505 gttactatgagtcgtacttcataggttag-ttatctcttcgttgtagtaaacaatgtttttgcatttgttactatgagtcgtatctcataagctacatta 6735407  T
Q  107 tctcttcgttgtaacaaacagag-tttttgcatttgttactatg 149  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||    
T  6735406 tctcttcgttgtagcaaacagagatttttacatttgttactatg 6735363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 5578377 - 5578236
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||  |||  |||  ||| |||||||| || | || ||||||| ||||||||    
T  5578377 gttactatgagccatacctcattggctacattatctcttcgttgtagcaaaaggag-atttctattcgttactataagtcgtacctcataggctacatta 5578279  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||||||| ||| ||||| |||||||||    
T  5578278 tctcttcgttgtagcaaacagagatttcgcattcgttactatg 5578236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 5599782 - 5599905
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||  ||| |||  ||||  |||||||||||| |  ||||||| |||||||||    
T  5599782 ttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcattactatgagccgttcctcataggctacattat 5599880  T
Q  108 ctcttcgttgtaacaaacagagttt 132  Q
    |||||||||||| ||||| ||||||    
T  5599881 ctcttcgttgtagcaaacggagttt 5599905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 31663366 - 31663229
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgtt--actatgagccatatctcatagactacatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||  ||||| ||  ||||||||   || ||||||| |||||||    
T  31663366 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttttactatgagttgtacctcataggctacatt 31663267  T
Q  106 atctcttcgttgtaacaaacagagtttttgcatttgtt 143  Q
    |||| ||| ||||| ||||| || ||||||||||||||    
T  31663266 atctattcattgtagcaaacggattttttgcatttgtt 31663229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 6735439 - 6735314
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttg-catttgttactatgagccatatctcatagactacatt 105  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||| ||||  |||||||||||||||| | || ||||||  |||||||    
T  6735439 gttactatgagtcgtatctcataagctacattatctcttcgttgtagcaaacagagatttttacatttgttactatgagtcgtacctcataagctacatt 6735340  T
Q  106 atctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||   ||| ||||||||||||||    
T  6735339 atctcttc---gtagcaaacagagttttt 6735314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 31663639 - 31663564
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttact 146  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||    
T  31663639 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagttttcacatttgttact 31663564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 4852562 - 4852626
Alignment:
Q  70 atttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||||| | || ||||||| ||||||||||||||||||||| ||||||||||||||    
T  4852562 atttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagttttt 4852626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 1505972 - 1506050
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||||| ||  |||||| ||||||||||||||||||||| ||||| |||||||  |||| |||||||||    
T  1505972 tttgttactatgagccgtacttcataggctacattatctcttcgttgtagcaaacggagttttcacattcgttactatg 1506050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 5578507 - 5578457
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  5578507 gttactatgagtcgtacctcgtaggctacattatctcttcgttgtagcaaa 5578457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 13702611 - 13702661
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  13702611 gttactatgagtcctacctcataggctacattatctcttcgttgtagcaaa 13702661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 14190480 - 14190557
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  14190480 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 14190557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 5909056 - 5909116
Alignment:
Q  72 ttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||||| ||||| ||||||    
T  5909056 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 5909116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 13713101 - 13713163
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttt 133  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||||    
T  13713101 tttgttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacggagtttt 13713163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 13702608 - 13702669
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttt 132  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||| ||||| ||||||    
T  13702608 tttgttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacggagttt 13702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 5578379 - 5578327
Alignment:
Q  72 ttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaa 124  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||| ||||    
T  5578379 ttgttactatgagccatacctcattggctacattatctcttcgttgtagcaaa 5578327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 5578509 - 5578441
Alignment:
Q  72 ttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcattt 140  Q
    ||||||||||||| | || ||| ||| ||||||||||||||||||||| ||||| ||||||| ||||||    
T  5578509 ttgttactatgagtcgtacctcgtaggctacattatctcttcgttgtagcaaacggagttttcgcattt 5578441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 4852717 - 4852755
Alignment:
Q  19 cgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  4852717 cgtacctcataggctacattatctcttcggtgtagcaaa 4852755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 5578244 - 5578196
Alignment:
Q  7 gttactatgagccgtacctcataggctacattat--ctcttcgttgtag 53  Q
    ||||||||||||| |||||||||| |||||||||  |||||||||||||    
T  5578244 gttactatgagccatacctcatagactacattatatctcttcgttgtag 5578196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 5938720 - 5938862
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||| ||| ||||||||||||||||| | || ||||||| ||| ||||    
T  5938720 gttactatgagtcgtacctcatagtctacattatctcttcgttgtagcaaactgagttttcgcatttgttactatgagtcgtacctcataggctatatta 5938819  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| |||||||  ||||||||||||||    
T  5938820 tctcttcgttgtagcaaacggagttttcacatttgttactatg 5938862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 5938787 - 5938929
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||  ||| |||  |||||||||||||||||| || ||||||| |||||| |    
T  5938787 gttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacggagttttcacatttgttactatgagccgtacctcataggctacatca 5938886  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| |||||||  ||||||||||||||    
T  5938887 tctcttcgttgtagcaaacggagttttcacatttgttactatg 5938929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 5938854 - 5938996
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| |||  |||||||||||||||||| || ||||||| ||||||||    
T  5938854 gttactatgagccgtacctcataggctacatcatctcttcgttgtagcaaacggagttttcacatttgttactatgagccgtacctcataggctacatta 5938953  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| || ||||  ||||| ||||||||    
T  5938954 tctcttcgttgtagcaaacggaattttcacatttattactatg 5938996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 5938921 - 5939047
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||  ||||| |||||||||||| || ||||||||||||||||    
T  5938921 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggaattttcacatttattactatgagccgtacctcatagactacatta 5939020  T
Q  107 tctcttcgttgtaacaaacagagtttt 133  Q
    ||||||||||||| ||||| |||||||    
T  5939021 tctcttcgttgtagcaaacggagtttt 5939047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 18111507 - 18111643
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||  ||| |||  ||||| |||||||||||| || ||||||| ||||||||    
T  18111507 gttattatgagcggtacctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatgagccgtacctcataggctacatta 18111606  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgtt 143  Q
    ||||||||||||| ||||| ||||||| |||||||||    
T  18111607 tctcttcgttgtagcaaacggagttttcgcatttgtt 18111643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 18111440 - 18111582
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | | |||  ||||||||| |||||||  || ||||||| ||||||||    
T  18111440 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggggttttcacatttgttattatgagcggtacctcataggctacatta 18111539  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| |||||||  ||||| ||||||||    
T  18111540 tctcttcgttgtagcaaacggagttttcacattttttactatg 18111582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 28034659 - 28034785
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||| | |||||||||||||||   || ||||||| ||||||||    
T  28034659 gttactatgagccgtacctcataggctacattatttcttcgttgtagcaaacaaagttttcggatttgttactatgagttgtacctcataggctacatta 28034758  T
Q  107 tctcttcgttgtaacaaacagagtttt 133  Q
    ||||||||||||| |||||||||||||    
T  28034759 tctcttcgttgtagcaaacagagtttt 28034785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 19441052 - 19441178
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||  ||| ||| ||||||||||||| ||||| || ||||||| ||||||||    
T  19441052 gttactatgagtcgtacctcatagactacattatctcttcgtcgtagcaaacggagttttcgcatttgttactacgagccgtacctcataggctacatta 19441151  T
Q  107 tctcttcgttgtaacaaacagagtttt 133  Q
    ||||||||||||| |||||| ||||||    
T  19441152 tctcttcgttgtagcaaacaaagtttt 19441178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 28034726 - 28034851
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| |||| ||||  | || |||||||||||| || ||||||| ||||||||    
T  28034726 gttactatgagttgtacctcataggctacattatctcttcgttgtagcaaacagag-ttttcaaattattactatgagccgtacctcataggctacatta 28034824  T
Q  107 tctcttcgttgtaacaaacagagtttt 133  Q
    ||||||||||||| ||||| |||||||    
T  28034825 tctcttcgttgtagcaaacggagtttt 28034851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 19384203 - 19384340
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||| ||| ||||| |||||||||||      ||||||| ||||||||    
T  19384203 gttactatgagccgtacctcataggttacattatctcttcgtcgtagcaaacggagttttcgcattcgttactatgag-----actcataggctacatta 19384297  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||| ||| ||||| ||||||| ||||| |||||||||    
T  19384298 tctcttcgtcgtagcaaacggagttttcgcattcgttactatg 19384340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 19480110 - 19479992
Alignment:
Q  8 ttactatgagc-cgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| ||| | || ||||||||||||||||||||| | || ||||||| ||| ||||    
T  19480110 ttactatgagcacgtacctcataggctacattatctcttcattgtaggaaacaaagtttttgcatttgttactatgagtcgtacctcataggctatatta 19480011  T
Q  107 tctcttcgttgtaacaaac 125  Q
    ||||||||||||| |||||    
T  19480010 tctcttcgttgtagcaaac 19479992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 14521162 - 14521046
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| ||||||||    
T  14521162 gttactatgagccgtacctcatacgctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacatta 14521064  T
Q  107 tctcttcgttgtaacaaa 124  Q
    ||||||||||||| ||||    
T  14521063 tctcttcgttgtagcaaa 14521046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 211 - 368
Target Start/End: Complemental strand, 8578860 - 8578714
Alignment:
Q  211 ttgtagttgtggtaacttcaaaaacaataatgctgc---attcaagatttaaaacttataagattctactaagtcttgaatagttaaccctccacagtcc 307  Q
    |||||||||||||||||| |||||||||||||||||   ||||||||| |||||||||              |||||||||||| ||| ||||||||| |    
T  8578860 ttgtagttgtggtaacttgaaaaacaataatgctgctgcattcaagatataaaactta--------------gtcttgaatagtcaactctccacagttc 8578775  T
Q  308 acacgacacttatgcataaattcataaactaaaagataatacttccttatggatcctctaa 368  Q
    |||||||||| |||||||||||||||||||||||||||||  || ||||||||||||||||    
T  8578774 acacgacactcatgcataaattcataaactaaaagataatttttgcttatggatcctctaa 8578714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 19384148 - 19384278
Alignment:
Q  18 ccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattatctcttcgttg 117  Q
    |||||||||||||| |||||||||||||||| ||||||||  ||| |||  |||| ||||||||||||| || |||||||  |||||||||||||||| |    
T  19384148 ccgtacctcataggttacattatctcttcgtcgtagcaaacggag-tttcacattcgttactatgagccgtacctcataggttacattatctcttcgtcg 19384246  T
Q  118 taacaaacagagtttttgcatttgttactatg 149  Q
    || ||||| ||||||| ||||| |||||||||    
T  19384247 tagcaaacggagttttcgcattcgttactatg 19384278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 19384282 - 19384375
Alignment:
Q  24 ctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattatctcttcgttg 117  Q
    ||||||||||||||||||||||||| ||||||||  ||| ||| ||||| ||||||||||||| || ||||||| |||||||||||||||||||    
T  19384282 ctcataggctacattatctcttcgtcgtagcaaacggagttttcgcattcgttactatgagccgtacctcataggctacattatctcttcgttg 19384375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 45227351 - 45227234
Alignment:
Q  8 ttactatgagc-cgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||| || | || ||||| | ||||||||    
T  45227351 ttactatgagcacgtaccacataggctacattatctcttcgttgtagcaaacagagtttttacatttcttactataagtcgtacctcatgggctacatta 45227252  T
Q  107 tctcttcgttgtaacaaa 124  Q
    ||||||| ||||| ||||    
T  45227251 tctcttcattgtagcaaa 45227234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 19441011 - 19441125
Alignment:
Q  34 acattatctcttcgttgtagcaaatagagcttttgc-atttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||||||||| |||| || | ||||   ||||||||||||||| | || ||||||||||||||||||||||||| ||| ||||| ||||||    
T  19441011 acattatctcttcgttgtatcaaacagtgttttttttatttgttactatgagtcgtacctcatagactacattatctcttcgtcgtagcaaacggagttt 19441110  T
Q  133 ttgcatttgttacta 147  Q
    | |||||||||||||    
T  19441111 tcgcatttgttacta 19441125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 29897111 - 29897226
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||            ||||||||| || || |||||| |||| ||||    
T  29897111 gttactatgagccgtacctcataggctacattatctctttgttgtagcaaacagag------------ttactatgaaccgtacctcataaactatatta 29897198  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||||||||||||    
T  29897199 tctcttcgttgtagcaaacagagttttt 29897226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 28034793 - 28034882
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatag 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||   |||| |||||||||||| || |||||||    
T  28034793 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttcaaatttattactatgagccgtacctcatag 28034882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 29897055 - 29897168
Alignment:
Q  6 agttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatt 105  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||           |||||||||||||| || ||||||| |||||||    
T  29897055 agttactatgagccgtacctcataggctacattatttcttcgttgtagcaaa-cga-----------tgttactatgagccgtacctcataggctacatt 29897142  T
Q  106 atctcttcgttgtaacaaacagagtt 131  Q
    ||||||| |||||| |||||||||||    
T  29897143 atctctttgttgtagcaaacagagtt 29897168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 5938717 - 5938795
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  5938717 tttgttactatgagtcgtacctcatagtctacattatctcttcgttgtagcaaactgagttttcgcatttgttactatg 5938795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 5835618 - 5835668
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5835618 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaa 5835668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 18111435 - 18111515
Alignment:
Q  69 catttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||| | |||||  ||||||||| ||||    
T  18111435 catttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggggttttcacatttgttattatg 18111515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 19384089 - 19384140
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaat 58  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  19384089 gttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaat 19384140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 19384332 - 19384375
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttg 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19384332 gttactatgagccgtacctcataggctacattatctcttcgttg 19384375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 28034659 - 28034734
Alignment:
Q  74 gttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| || ||||||| ||||||||| ||||||||||| |||||| |||||| | |||||||||||||    
T  28034659 gttactatgagccgtacctcataggctacattatttcttcgttgtagcaaacaaagttttcggatttgttactatg 28034734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 2746876 - 2746770
Alignment:
Q  37 ttatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgc 136  Q
    |||||||||| ||||||||||  ||| |||  ||||| |||||||||||| || ||||||| ||  ||||||||||||||||| ||||| || |||| ||    
T  2746876 ttatctcttcattgtagcaaacggagttttcacattttttactatgagccgtacctcataggctttattatctcttcgttgtagcaaacggatttttcgc 2746777  T
Q  137 atttgtt 143  Q
    |||||||    
T  2746776 atttgtt 2746770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 19480043 - 19479993
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  19480043 gttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaa 19479993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 2746838 - 2746789
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  2746838 ttactatgagccgtacctcataggctttattatctcttcgttgtagcaaa 2746789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 19480110 - 19480035
Alignment:
Q  75 ttactatgagc-catatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||| | || ||||||| ||||||||||||||| |||||  ||||| ||||||||||||||||||||||    
T  19480110 ttactatgagcacgtacctcataggctacattatctcttcattgtaggaaacaaagtttttgcatttgttactatg 19480035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 45227332 - 45227277
Alignment:
Q  93 catagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactat 148  Q
    ||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  45227332 cataggctacattatctcttcgttgtagcaaacagagtttttacatttcttactat 45227277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 5835615 - 5835677
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttt 133  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||| ||||| |||||||    
T  5835615 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 5835677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 29897165 - 29897226
Alignment:
Q  6 agttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagctttt 67  Q
    ||||||||||| ||||||||||||  ||| |||||||||||||||||||||| |||| ||||    
T  29897165 agttactatgaaccgtacctcataaactatattatctcttcgttgtagcaaacagagttttt 29897226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 14521164 - 14521104
Alignment:
Q  72 ttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||||| || ||||||  ||||||||||||||||||||| ||||| ||||||    
T  14521164 ttgttactatgagccgtacctcatacgctacattatctcttcgttgtagcaaacggagttt 14521104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 45227283 - 45227233
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaat 58  Q
    ||||||| || |||||||||| ||||||||||||||||| |||||||||||    
T  45227283 ttactataagtcgtacctcatgggctacattatctcttcattgtagcaaat 45227233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 19384064 - 19384139
Alignment:
Q  49 tgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaa 124  Q
    |||||||||  ||| ||| ||||| ||||||||||| | || ||||||| ||||||||||||||||| ||| ||||    
T  19384064 tgtagcaaacggagttttcgcattcgttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaa 19384139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 8553460 - 8553561
Alignment:
Q  148 tgtgatactatactgcagagtatcaccttgaatgtggctgatatgggctcaatcacagagtttttgtagttgtggtaacttcaaaaacaataatgctgca 247  Q
    |||||||||||||||||||||||||| |  ||||||| |||||  | ||||||        | |||||||||||||||||| |||| |||||||||  ||    
T  8553460 tgtgatactatactgcagagtatcacatcaaatgtggttgatacagactcaatg-------tgttgtagttgtggtaactttaaaaccaataatgccaca 8553552  T
Q  248 ttcaagatt 256  Q
    |||||||||    
T  8553553 ttcaagatt 8553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 8584192 - 8584154
Alignment:
Q  148 tgtgatactatactgcagagtatcaccttgaatgtggct 186  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  8584192 tgtgatactatactgcagagtatcacatggaatgtggct 8584154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 19480177 - 19480127
Alignment:
Q  8 ttactatgagcc-gtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    |||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  19480177 ttactatgagcatgtacctcaaagactacattatctcttcgttgtagcaaa 19480127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 8578456 - 8578423
Alignment:
Q  368 atggatgtccttcaccaagatgagcgagttcaac 401  Q
    ||||||||||||| ||||||||||||||||||||    
T  8578456 atggatgtccttccccaagatgagcgagttcaac 8578423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 28034860 - 28034904
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    |||||||||||||||||||||||||     ||||||||||||||||||||    
T  28034860 ttactatgagccgtacctcataggc-----tatctcttcgttgtagcaaa 28034904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 31314981 - 31315107
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||  ||||| |||||||||| | || ||||||| ||||||||    
T  31314981 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatgagtcgtacctcataggctacatta 31315080  T
Q  107 tctcttcgttgtaacaaacagagtttt 133  Q
    ||||||||||||| |||||||||||||    
T  31315081 tctcttcgttgtagcaaacagagtttt 31315107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 31347136 - 31347000
Alignment:
Q  13 atgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattatctctt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| |||  ||||| |||||||||||| |||||||||  ||||||||||||||    
T  31347136 atgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatgagccgtatctcatatgctacattatctctt 31347037  T
Q  113 cgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||| ||||| |||||||  ||||| ||||||||    
T  31347036 cgttgtagcaaacggagttttcacattttttactatg 31347000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 31315119 - 31315252
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgca-tttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||  || ||| ||||||||||||||| ||||||| ||||||||    
T  31315119 ttactatgagcagtacctcataggctacattatctcttcgttgtagcaaacagagttttcacatttttttactatgagccatacctcataggctacatta 31315218  T
Q  107 tctcttcgttgtaacaaacagagtttttgcattt 140  Q
    ||||||||||||| ||||| || |||| ||||||    
T  31315219 tctcttcgttgtagcaaacggatttttcgcattt 31315252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 2743573 - 2743449
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| ||||||||    
T  2743573 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacatta 2743475  T
Q  107 tctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||| ||||| ||||||    
T  2743474 tctcttcgttgtagcaaacggagttt 2743449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 31347074 - 31346934
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||  ||| |||  ||||| |||||||||| | || || |||| |||||||||    
T  31347074 ttactatgagccgtatctcatatgctacattatctcttcgttgtagcaaacggagttttcacattttttactatgagtcgtaccttataggctacattat 31346975  T
Q  108 ctcttcgttgtaacaaacagagtttttgcatttgttactat 148  Q
    |||||||||||| ||||| |||||||  |||||||||||||    
T  31346974 ctcttcgttgtagcaaacggagttttcacatttgttactat 31346934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 2743507 - 2743383
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| ||||||||    
T  2743507 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacatta 2743409  T
Q  107 tctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||| ||||| ||||||    
T  2743408 tctcttcgttgtagcaaacggagttt 2743383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 2743441 - 2743315
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||| ||||||||||||| |  ||||||| ||||||||    
T  2743441 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacattcgttactatgagccgttcctcataggctacatta 2743343  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||| ||||    
T  2743342 tctcttcgttgtagcaaacggagatttt 2743315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 31346935 - 31346814
Alignment:
Q  27 ataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaaca 126  Q
    ||||||||||||||||||||||||||| |||  ||  |||  |||||||||||||||| | || ||||||| ||||||||||||||||||||| ||||||    
T  31346935 ataggctacattatctcttcgttgtagaaaacggat-tttcacatttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaaca 31346837  T
Q  127 gagtttttgcatttgttactatg 149  Q
    |||||||  ||||| ||||||||    
T  31346836 gagttttcacattttttactatg 31346814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 31346889 - 31346811
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagc 85  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||  ||||| |||||||||||    
T  31346889 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagttttcacattttttactatgagc 31346811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 31314976 - 31315056
Alignment:
Q  69 catttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  31314976 catttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 31315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 11951372 - 11951282
Alignment:
Q  36 attatctcttcgttgtagcaaatagagctt-ttgcatttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaac 125  Q
    |||||||||||||||| ||||| | |  || ||||||||||||||||||| | |||||||||| ||||||||||||||||||||| |||||    
T  11951372 attatctcttcgttgtggcaaacataatttcttgcatttgttactatgagtcgtatctcataggctacattatctcttcgttgtagcaaac 11951282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 11951333 - 11951283
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  11951333 gttactatgagtcgtatctcataggctacattatctcttcgttgtagcaaa 11951283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 2743575 - 2743515
Alignment:
Q  72 ttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttt 132  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||||| ||||| ||||||    
T  2743575 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 2743515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 22207896 - 22208038
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| |||  ||||  |||||||||||| || ||||||| ||||||||    
T  22207896 gttactatgagccgtacctcataggttacattatctcttcgttgtagcaaacggagttttcacattaattactatgagccgtacctcataggctacatta 22207995  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||| |||||| |||||||| |||||| |||||||||||||    
T  22207996 tctcttggttgtagcaaacagaatttttgaatttgttactatg 22208038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 15088567 - 15088684
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||| || |||||||||||||||||    
T  15088567 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagtttttgcatttgttactatgagccgtacctcatagactacattat 15088666  T
Q  108 ctcttcgttgtaacaaac 125  Q
    |||||| ||||| |||||    
T  15088667 ctcttcattgtagcaaac 15088684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 22207964 - 22208081
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||  ||||| ||||||||||||||||| || ||||||| |||||||||    
T  22207964 ttactatgagccgtacctcataggctacattatctcttggttgtagcaaacagaatttttgaatttgttactatgagccgtacctcataggctacattat 22208063  T
Q  108 ctcttcgttgtaacaaac 125  Q
    |||||||||||| |||||    
T  22208064 ctcttcgttgtagcaaac 22208081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 22211175 - 22211292
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||| || |||||||||||||||||    
T  22211175 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagtttttgcatttgttactatgagccgtacctcatagactacattat 22211274  T
Q  108 ctcttcgttgtaacaaac 125  Q
    |||||| ||||| |||||    
T  22211275 ctcttcattgtagcaaac 22211292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 51844347 - 51844489
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||  ||| ||| ||||| ||||||||||||| || ||||||  ||||||||    
T  51844347 gttactatgagtcgtacctcataggctacattatctcttcgctgtagcaaacggagatttcgcattcgttactatgagccgtacctcataagctacatta 51844446  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| ||| ||| ||||| |||| ||||    
T  51844447 tctcttcgttgtagcaaacggagatttcgcattcgttattatg 51844489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 22207625 - 22207751
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||  ||  |||  ||||| |||||||||||| |||||||||| |||||||||    
T  22207625 ttactatgagccgtacctcatatgctacattatctcttcgttgtaacaaacggaattttcacatttattactatgagccgtatctcataggctacattat 22207724  T
Q  108 ctcttcgttgtaacaaacagagttttt 134  Q
    |||||||||||| |||||  |||||||    
T  22207725 ctcttcgttgtagcaaacgaagttttt 22207751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 22208030 - 22208148
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |  |||  ||||| |||||||||||| || ||||||| ||||||||    
T  22208030 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgaaattttcacatttattactatgagccgtacctcataggctacatta 22208129  T
Q  107 tctcttcgttgtaacaaac 125  Q
    ||||||||||||| |||||    
T  22208130 tctcttcgttgtagcaaac 22208148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 22207760 - 22207887
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||  ||| |||  ||||  |||||||||||| || ||||||| ||||||||    
T  22207760 gttactataagtcgtacctcataggctacattatctcttcgttgtagcaaacggagttttcacattaattactatgagccgtaactcataggctacatta 22207859  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| |||||  |||||||    
T  22207860 tctcttcgttgtagcaaacgaagttttt 22207887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 51844414 - 51844532
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| ||| ||||| |||| |||||| | || ||||||| ||||||||    
T  51844414 gttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggagatttcgcattcgttattatgagtcgtacctcataggctacatta 51844513  T
Q  107 tctcttcgttgtaacaaac 125  Q
    ||||||| || ||||||||    
T  51844514 tctcttcattataacaaac 51844532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 22207828 - 22207955
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgc--atttgttactatgagccatatctcatagactacatt 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||   || ||||    ||||||||||||||||| || |||||||  ||||||    
T  22207828 ttactatgagccgtaactcataggctacattatctcttcgttgtagcaaacgaagtttttctcgatttgttactatgagccgtacctcataggttacatt 22207927  T
Q  106 atctcttcgttgtaacaaacagagtttt 133  Q
    |||||||||||||| ||||| |||||||    
T  22207928 atctcttcgttgtagcaaacggagtttt 22207955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 14114883 - 14114754
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttt--tgcatttgttactatgagccatatctcatagactacat 104  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||||| |||| |||  |  ||||||||||||||| | || || |||| ||||||    
T  14114883 gttactatgagtcgtacctcgtaagctacattatctcttcgttgtagcaaacagagtttttctcaatttgttactatgagtcgtaccttataggctacat 14114784  T
Q  105 tatctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||||| ||||| ||||||||    
T  14114783 tatctcttcgttgtagcaaacggagttttt 14114754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 51844281 - 51844422
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||| ||| ||||||||||||| | |||||| || |||| ||||||||| | ||| ||||||||||||||||| | || ||||||| |||||||||    
T  51844281 ttactatgtgccatacctcataggctgcgttatctttttgttgcagcaaatagtgttttcgcatttgttactatgagtcgtacctcataggctacattat 51844380  T
Q  108 ctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||| |||| ||||| ||| ||| ||||| |||||||||    
T  51844381 ctcttcgctgtagcaaacggagatttcgcattcgttactatg 51844422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 22207692 - 22207819
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgc--atttgttactatgagccatatctcatagactacatt 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||   || ||||    |||||||||||| || | || ||||||| |||||||    
T  22207692 ttactatgagccgtatctcataggctacattatctcttcgttgtagcaaacgaagtttttctcgatttgttactataagtcgtacctcataggctacatt 22207791  T
Q  106 atctcttcgttgtaacaaacagagtttt 133  Q
    |||||||||||||| ||||| |||||||    
T  22207792 atctcttcgttgtagcaaacggagtttt 22207819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 14114954 - 14114823
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttt----tgcatttgttactatgagccatatctcatagactac 102  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||  |||    |  ||||||||||||||| | || ||| ||  ||||    
T  14114954 gttactatgagccgcacctcgtaggctacattatctcttcgttgtagcaaacagaatttttttctcaatttgttactatgagtcgtacctcgtaagctac 14114855  T
Q  103 attatctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||||||| ||||||||||||||    
T  14114854 attatctcttcgttgtagcaaacagagttttt 14114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 14114814 - 14114685
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgc--atttgttactatgagccatatctcatagactacat 104  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||  ||| ||||    ||||||||||||||| | || |||||||  |||||    
T  14114814 gttactatgagtcgtaccttataggctacattatctcttcgttgtagcaaacggagtttttctcaatttgttactatgagtcgtacctcataggttacat 14114715  T
Q  105 tatctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||| ||||| ||||| ||| ||||    
T  14114714 tatctcttcattgtagcaaacggagatttt 14114685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 15088567 - 15088641
Alignment:
Q  75 ttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||| || ||||||  |||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  15088567 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagtttttgcatttgttactatg 15088641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 22211175 - 22211249
Alignment:
Q  75 ttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||| || ||||||  |||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  22211175 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagtttttgcatttgttactatg 22211249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 15088633 - 15088683
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  15088633 gttactatgagccgtacctcatagactacattatctcttcattgtagcaaa 15088683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 22211241 - 22211291
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 57  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  22211241 gttactatgagccgtacctcatagactacattatctcttcattgtagcaaa 22211291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 22207625 - 22207699
Alignment:
Q  75 ttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||| || ||||||  ||||||||||||||||||||||||||| || ||||  ||||| ||||||||    
T  22207625 ttactatgagccgtacctcatatgctacattatctcttcgttgtaacaaacggaattttcacatttattactatg 22207699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 14114958 - 14114894
Alignment:
Q  70 atttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttttt 134  Q
    |||||||||||||||||  | ||| ||| ||||||||||||||||||||| |||||||| |||||    
T  14114958 atttgttactatgagccgcacctcgtaggctacattatctcttcgttgtagcaaacagaattttt 14114894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 3560 - 3701
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  |||  ||| |||  ||||||||||||||| || || ||||||| |||||||||    
T  3560 ttactatgagccttacctcataggctacattatctcttcgttgtaataaacggagttttcacatttgttactatgacccgtacctcataggctacattat 3659  T
Q  108 ctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||| |||||| ||||||  ||||||||||||||    
T  3660 ctcttcgttgtagcaaacaaagttttcacatttgttactatg 3701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 3626 - 3737
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| | || |||  |||||||||||||||||| || ||||||| ||||||||    
T  3626 gttactatgacccgtacctcataggctacattatctcttcgttgtagcaaacaaagttttcacatttgttactatgagccgtacctcataggctacatta 3725  T
Q  107 tctcttcgttgt 118  Q
    ||||||||||||    
T  3726 tctcttcgttgt 3737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 3518 - 3634
Alignment:
Q  34 acattatctcttcgttgtagcaaatagagctttt-gcatttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagttt 132  Q
    |||||||||||||||||| || || ||  ||||| |||||| |||||||||||| || ||||||| |||||||||||||||||||||| |||| ||||||    
T  3518 acattatctcttcgttgtggcgaacagttctttttgcatttcttactatgagccttacctcataggctacattatctcttcgttgtaataaacggagttt 3617  T
Q  133 ttgcatttgttactatg 149  Q
    |  ||||||||||||||    
T  3618 tcacatttgttactatg 3634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 41528441 - 41528580
Alignment:
Q  8 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacattat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||  |||||||||||||||||| |  ||||||| |||||||||    
T  41528441 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatgagccgttcctcataggctacattat 41528539  T
Q  108 ctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    |||||||||||| ||||| ||| |||  ||||||||||||||    
T  41528540 ctcttcgttgtagcaaacggag-tttcacatttgttactatg 41528580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 41528572 - 41528698
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||||||||||||||||| |  ||||||| ||||||||    
T  41528572 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatgagccgttcctcataggctacatta 41528670  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||||||||| ||||| ||||||||    
T  41528671 tctcttcgttgtagcaaacggagttttt 41528698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 41528506 - 41528646
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||  |||||||||||||||||| |  ||||||| ||||||||    
T  41528506 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatgagccgttcctcataggctacatta 41528604  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| ||||| ||| |||  ||||||||||||||    
T  41528605 tctcttcgttgtagcaaacggag-tttcacatttgttactatg 41528646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 37369044 - 37368910
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttg-ttactatgagccatatctcatagactacatt 105  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| |||  ||  |||| |||||| ||||| | |||| || ||||||| |||||||    
T  37369044 gttactatgagtcgtacctcataggctacattatctctttgttgtagtaaacggattttttacatttgtttactgtaagccgtacctcataggctacatt 37368945  T
Q  106 atctcttcgttgtaacaaacagagtttttgcattt 140  Q
    |||||||||||||| ||||| || ||||| |||||    
T  37368944 atctcttcgttgtagcaaacggattttttacattt 37368910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 37369087 - 37368975
Alignment:
Q  34 acattatctcttcgttgtagcaaatagagcttttgc---atttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaacagagt 130  Q
    |||||||||||||||||| || || |||| | || |   ||| ||||||||||| | || ||||||| |||||||||||||| ||||||  |||| || |    
T  37369087 acattatctcttcgttgtggcgaacagagttatttctcaattcgttactatgagtcgtacctcataggctacattatctctttgttgtagtaaacggatt 37368988  T
Q  131 ttttgcatttgtt 143  Q
    |||| ||||||||    
T  37368987 ttttacatttgtt 37368975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 69822 - 69695
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| |||  |||  |||||||||||||||||| || ||||||| ||||||||    
T  69822 gttactatgagttgtacctcataggctacattatctcttcgttgtagcaaacagatttttgtcatttgttactatgagccgtacctcataggctacatta 69723  T
Q  107 tctcttcgttgtaacaaacagagttttt 134  Q
    ||||||| ||||| |||||||| |||||    
T  69722 tctcttcattgtagcaaacagatttttt 69695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 69889 - 69747
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| ||| | |||||||||| ||||||||||||||||||||||  ||| |||  ||||||||||||||||   || ||||||| ||||||||    
T  69889 gttactatgagtcgtgcatcataggctatattatctcttcgttgtagcaaacggagttttcacatttgttactatgagttgtacctcataggctacatta 69790  T
Q  107 tctcttcgttgtaacaaacagagtttttgcatttgttactatg 149  Q
    ||||||||||||| |||||||| ||||  ||||||||||||||    
T  69789 tctcttcgttgtagcaaacagatttttgtcatttgttactatg 69747  T

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Target: scaffold0060 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 40053 - 39927
Alignment:
Q  7 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagcttttgcatttgttactatgagccatatctcatagactacatta 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    | |||  || || |||||||||| |||| ||||||| ||||||||    
T  40053 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacgatgttttcacaatttttactatgagtcatacctcataggctacatta 39954  T
Q  107 tctcttcgttgtaacaaacagagtttt 133  Q
    ||||||||||||| |||||||| ||||    
T  39953 tctcttcgttgtagcaaacagaatttt 39927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 40056 - 40002
Alignment:
Q  71 tttgttactatgagccatatctcatagactacattatctcttcgttgtaacaaac 125  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||| |||||    
T  40056 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaac 40002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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