View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9770_low_12 (Length: 243)

Name: NF9770_low_12
Description: NF9770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9770_low_12
NF9770_low_12
[»] chr8 (5 HSPs)
chr8 (92-225)||(44950036-44950190)
chr8 (154-216)||(44730090-44730152)
chr8 (1-52)||(44949977-44950028)
chr8 (1-52)||(44730164-44730215)
chr8 (20-135)||(45342934-45343046)
[»] chr5 (2 HSPs)
chr5 (1-159)||(17060591-17060746)
chr5 (1-148)||(33562245-33562389)
[»] chr2 (9 HSPs)
chr2 (1-159)||(44624724-44624882)
chr2 (1-159)||(44615351-44615509)
chr2 (119-159)||(44749736-44749776)
chr2 (1-152)||(39153011-39153159)
chr2 (22-152)||(39396755-39396882)
chr2 (60-152)||(39421321-39421413)
chr2 (160-204)||(44624661-44624705)
chr2 (88-151)||(39380660-39380723)
chr2 (160-204)||(44615288-44615332)
[»] scaffold0283 (2 HSPs)
scaffold0283 (1-52)||(5957-6008)
scaffold0283 (92-127)||(6016-6051)
[»] chr6 (1 HSPs)
chr6 (54-152)||(16114319-16114417)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 44950036 - 44950190
Alignment:
Q  92 cagttgttctagaagatagacgtggctttcatcaataatcacagctttgtctcccttcttaggcagtg---------------------ttatatccaaa 170  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||                     |||||||||||    
T  44950036 cagttgttctagaagatagacgcggctttcatcaataatcacagctttgtctcccttcttaggcaatggaaatatggggtcgtctagtattatatccaaa 44950135  T
Q  171 acaattttcgctatatctgatgattctcgcaaataaactagagtgttaagtttct 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44950136 acaattttcgctatatctgatgattctcgcaaataaactagagtgttaagtttct 44950190  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 44730152 - 44730090
Alignment:
Q  154 gcagtgttatatccaaaacaattttcgctatatctgatgattctcgcaaataaactagagtgt 216  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  44730152 gcagtgttatatccaaaactattttcgctagatccgatgattctcgcaaataaactagagtgt 44730090  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44949977 - 44950028
Alignment:
Q  1 tattttcttttatgttaaatttcaactcatgtgctagcttcaaagcttcatc 52  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44949977 tattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatc 44950028  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44730215 - 44730164
Alignment:
Q  1 tattttcttttatgttaaatttcaactcatgtgctagcttcaaagcttcatc 52  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  44730215 tattttcttttatgttagctttcaactcatgtgctagcttcaaagcttcatc 44730164  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 45343046 - 45342934
Alignment:
Q  20 tttcaactcatgtgctagcttcaaagcttcatcatctctaacacaaggtttaatatttggtacaattatcatcagttgttctagaagatagacgtggctt 119  Q
    |||||||||| |||||||||| || ||||| ||   ||| ||||||||||||||| |||| |  ||| |||||||||||||||| ||||||| ||| |||    
T  45343046 tttcaactcaagtgctagcttgaatgcttcttc---tcttacacaaggtttaatacttggcaagattctcatcagttgttctaggagatagatgtgcctt 45342950  T
Q  120 tcatcaataatcacag 135  Q
    |||  |||||||||||    
T  45342949 tcactaataatcacag 45342934  T

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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 17060746 - 17060591
Alignment:
Q  1 tattttcttttatgttaaatttcaactcatgtgctagcttcaaagcttcatcatctctaacacaaggtttaatatttggtacaattatcatcagttgttc 100  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||| || | |   ||||||| |||||||||||||   |||||||||||||||||    
T  17060746 tatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtctttt---acacaagatttaatatttggtgacattatcatcagttgttc 17060650  T
Q  101 tagaagatagacgtggctttcatcaataatcacagctttgtctcccttcttaggcagtg 159  Q
    ||| | | ||| | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  17060649 tagcataaagatgcggctttcatcaataatcacaactttgtctcccttcttaggtagtg 17060591  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 33562389 - 33562245
Alignment:
Q  1 tattttcttttatgttaaatttcaactcatgtgctagcttcaaagcttcatcatctctaacacaaggtttaatatttggtacaattatcatcagttgttc 100  Q
    |||||||||| ||||||  |||||| |||  |||||||||||| ||||| |    ||| |||||||||| ||||| ||||   ||| |||||||||||||    
T  33562389 tattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttt---tctcacacaaggttcaatatctggtgagattctcatcagttgttc 33562293  T
Q  101 tagaagatagacgtggctttcatcaataatcacagctttgtctccctt 148  Q
     ||||||||||  |||   ||| ||||||| ||| | |||||||||||    
T  33562292 cagaagatagatttggtaatcaacaataatgacaacattgtctccctt 33562245  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 44624882 - 44624724
Alignment:
Q  1 tattttcttttatgttaaatttcaactcatgtgctagcttcaaagcttcatcatctctaacacaaggtttaatatttggtacaattatcatcagttgttc 100  Q
    |||||||||| ||||||  |||||||||| | ||||||||||| ||||||||   ||| |||||||||||||||||||||   ||| ||||||||| |||    
T  44624882 tattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatc---tcttacacaaggtttaatatttggtgagattgtcatcagtttttc 44624786  T
Q  101 tagaagatagacgtggctttc---atcaataatcacagctttgtctcccttcttaggcagtg 159  Q
    ||| ||||||| | |||||||   |||||||||||||||||||||||| |||||||| ||||    
T  44624785 tagcagatagatgcggctttcatcatcaataatcacagctttgtctcctttcttaggaagtg 44624724  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 44615509 - 44615351
Alignment:
Q  1 tattttcttttatgttaaatttcaactcatgtgctagcttcaaagcttcatcatctctaacacaaggtttaata---tttggtacaattatcatcagttg 97  Q
    |||||||||| ||||||  ||||||||||   ||||||||||| ||||||||   ||| ||||||| |||||||   ||||||   ||||||||||||||    
T  44615509 tattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatc---tcttacacaagatttaataatatttggtgagattatcatcagttg 44615413  T
Q  98 ttctagaagatagacgtggctttcatcaataatcacagctttgtctcccttcttaggcagtg 159  Q
    |||||| |||||||    || ||||||||||||||| ||||||||||| |||||||||||||    
T  44615412 ttctagcagatagatccagccttcatcaataatcaccgctttgtctcctttcttaggcagtg 44615351  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 44749776 - 44749736
Alignment:
Q  119 ttcatcaataatcacagctttgtctcccttcttaggcagtg 159  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  44749776 ttcatcaataatcacagctttgtcacccttcttaggcagtg 44749736  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 39153159 - 39153011
Alignment:
Q  1 tattttcttttatgttaaatttcaactcatgtgctagcttcaaagcttcatcatctctaacacaaggtttaatatttggtacaattatcatcagttgttc 100  Q
    ||||||||||||| |||  |||||| |||||||| || ||||| ||||| ||   ||| |||||||||||||| || |||   ||| |||||||||||||    
T  39153159 tattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttc---tcttacacaaggtttaatcttcggtgagattctcatcagttgttc 39153063  T
Q  101 tagaagatagacgtggctttcatcaataatcacagctttgtctcccttctta 152  Q
    ||| ||| ||| |  |||  |||| ||||||||||| | |||||| ||||||    
T  39153062 tagcagaaagatgcagctaccatctataatcacagcatggtctccgttctta 39153011  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 39396755 - 39396882
Alignment:
Q  22 tcaactcatgtgctagcttcaaagcttcatcatctctaacacaaggtttaatatttggtacaattatcatcagttgttctagaagatagacgtggctttc 121  Q
    |||| ||||||||||||||||  ||||| ||   ||| ||||||||| ||||| |||||   ||| ||||||||| |||||| |  |||| |||||| ||    
T  39396755 tcaaatcatgtgctagcttcagtgcttcttc---tcttacacaaggtctaatagttggtgagattctcatcagttcttctagcacgtagatgtggctatc 39396851  T
Q  122 atcaataatcacagctttgtctcccttctta 152  Q
     ||||||| |||| | |||||||||||||||    
T  39396852 ctcaataaccacaccattgtctcccttctta 39396882  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 39421321 - 39421413
Alignment:
Q  60 acacaaggtttaatatttggtacaattatcatcagttgttctagaagatagacgtggctttcatcaataatcacagctttgtctcccttctta 152  Q
    ||||||| |||||||| ||||   ||| |||||||||||||||| ||| ||| |||| | || ||||||||| || | |||||||||||||||    
T  39421321 acacaagttttaatatgtggtgagattttcatcagttgttctagcagaaagatgtggttctcttcaataatcgcatcattgtctcccttctta 39421413  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 44624705 - 44624661
Alignment:
Q  160 ttatatccaaaacaattttcgctatatctgatgattctcgcaaat 204  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||    
T  44624705 ttatatccaaaacaatttttgctggatctgatgattctcgcaaat 44624661  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 39380660 - 39380723
Alignment:
Q  88 tcatcagttgttctagaagatagacgtggctttcatcaataatcacagctttgtctcccttctt 151  Q
    |||||||||||||||| ||| ||| | |||| |||| || ||||||||| ||||||||||||||    
T  39380660 tcatcagttgttctagcagaaagatgcggctatcataaaaaatcacagcattgtctcccttctt 39380723  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 44615332 - 44615288
Alignment:
Q  160 ttatatccaaaacaattttcgctatatctgatgattctcgcaaat 204  Q
    ||||||||||||||| ||| |||  ||||||||||||||||||||    
T  44615332 ttatatccaaaacaagttttgctggatctgatgattctcgcaaat 44615288  T

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Target: scaffold0283 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5957 - 6008
Alignment:
Q  1 tattttcttttatgttaaatttcaactcatgtgctagcttcaaagcttcatc 52  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5957 tattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatc 6008  T

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Target: scaffold0283; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 6016 - 6051
Alignment:
Q  92 cagttgttctagaagatagacgtggctttcatcaat 127  Q
    |||||||||||||||||||||| |||||||||||||    
T  6016 cagttgttctagaagatagacgcggctttcatcaat 6051  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 16114417 - 16114319
Alignment:
Q  54 tctctaacacaaggtttaatatttggtacaattatcatcagttgttctagaagatagacgtggctttcatcaataatcacagctttgtctcccttctta 152  Q
    ||||| |||| |||||||||| |||||   ||| ||||||||| |||||  ||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  16114417 tctcttacacgaggtttaatagttggtgatattctcatcagttcttctaacagatagatgtggcattcatcaataatcacagcattgtctcccttctta 16114319  T

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