View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9770_low_15 (Length: 228)
Name: NF9770_low_15
Description: NF9770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9770_low_15 |
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| [»] scaffold0283 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: scaffold0283 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5740 - 5964
Alignment:
| Q |
1 |
ggagagttactagtaactgactaattgaagaatttctgaatcaac---ttacgagagactatatttacaaaatccagggtcctaaacaccttcacagcta |
97 |
Q |
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|||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5740 |
ggagagataccagtaactgattaattgaagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagcta |
5839 |
T |
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| Q |
98 |
tattgttttcagcaacagatgcataaagcttagagacatcatctcgatcacgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatcc |
197 |
Q |
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| T |
5840 |
tattgtgttcagcaacagatgcataaagcttagagacatcatct------cgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatct |
5933 |
T |
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| Q |
198 |
gagaacctccaaagaatttttagtattttct |
228 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5934 |
gagaacctccaaagaatttttagtattttct |
5964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 44949760 - 44949984
Alignment:
| Q |
1 |
ggagagttactagtaactgactaattgaagaatttctgaatcaac---ttacgagagactatatttacaaaatccagggtcctaaacaccttcacagcta |
97 |
Q |
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|||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949760 |
ggagagataccagtaactgattaattgaagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagcta |
44949859 |
T |
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| Q |
98 |
tattgttttcagcaacagatgcataaagcttagagacatcatctcgatcacgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatcc |
197 |
Q |
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| T |
44949860 |
tattgtgttcagcaacagatgcataaagcttagagacatcatct------cgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatct |
44949953 |
T |
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| Q |
198 |
gagaacctccaaagaatttttagtattttct |
228 |
Q |
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| T |
44949954 |
gagaacctccaaagaatttttagtattttct |
44949984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 44730419 - 44730208
Alignment:
| Q |
11 |
tagtaactgactaattgaagaatttctgaatcaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgttttcagc |
110 |
Q |
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| T |
44730419 |
tagtaactgactaattgaagaatttcttaatcaacttacgagagactttattcacaaaatgcagggtcctaaacacattcgcagctatcttgtgttcaac |
44730320 |
T |
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| Q |
111 |
aacagatgcataaagcttagagacatcatctcgatcacgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatccgagaacctccaaa |
210 |
Q |
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||||||||| ||||||| |||||| |||||| | |||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| || |
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| T |
44730319 |
aacagatgcgtaaagctcagagacttcatct------ccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaa |
44730226 |
T |
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| Q |
211 |
gaatttttagtattttct |
228 |
Q |
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||||||| |||||||||| |
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| T |
44730225 |
gaattttcagtattttct |
44730208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 44624953 - 44624875
Alignment:
| Q |
150 |
atcaaagtaagtaagcaatccataaatcgttataatcaatagaaatccgagaacctccaaagaatttttagtattttct |
228 |
Q |
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|||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
44624953 |
atcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaataattttcagtattttct |
44624875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 44615580 - 44615502
Alignment:
| Q |
150 |
atcaaagtaagtaagcaatccataaatcgttataatcaatagaaatccgagaacctccaaagaatttttagtattttct |
228 |
Q |
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| T |
44615580 |
atcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttct |
44615502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 44615705 - 44615622
Alignment:
| Q |
28 |
aagaatttctgaatcaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgttttcagca |
111 |
Q |
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| T |
44615705 |
aagaatttctaaatcaacataccagagactttatttgcaaaacccagtgtcctacacagcttcacagctatcttgtattcagca |
44615622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 39153222 - 39153152
Alignment:
| Q |
158 |
aagtaagcaatccataaatcgttataatcaatagaaatccgagaacctccaaagaatttttagtattttct |
228 |
Q |
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|||||| |||||||||||||| | || || |||||| || |||||| |||||||||||| |||||||||| |
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| T |
39153222 |
aagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaattttcagtattttct |
39153152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 39216788 - 39216751
Alignment:
| Q |
190 |
agaaatccgagaacctccaaagaatttttagtattttc |
227 |
Q |
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| T |
39216788 |
agaaaaccgagaaccaccaaagaatttttagtattttc |
39216751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 39138814 - 39138738
Alignment:
| Q |
150 |
atcaaagtaagtaagcaatccataaatcgttataatcaatagaaatccgagaacctccaaagaatttttagtatttt |
226 |
Q |
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|||||| |||||||||||| |||||| | | ||||| |||||| ||||||||| ||| |||||||| |||||||| |
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| T |
39138814 |
atcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatttt |
39138738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 17060818 - 17060742
Alignment:
| Q |
149 |
gatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatccgagaacctccaaagaatttttagtattt |
225 |
Q |
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||||||| ||||||| ||||||||||| || | ||||| |||||||||||||||||||| |||| || ||||||| |
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| T |
17060818 |
gatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaatattcagtattt |
17060742 |
T |
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