View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9770_low_16 (Length: 226)
Name: NF9770_low_16
Description: NF9770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9770_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 51268659 - 51268853
Alignment:
| Q |
17 |
ggcatctataaaggccaacatgatcttcgagatcatttgaccgtcacaaatgttgttagtccatcgcgtgtgattgctccacctccaccaccggagaaac |
116 |
Q |
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| T |
51268659 |
ggcatctataaaggccaacataatcttcgagatcatttgaccgtcacaaatgttgttagtccatcgcgtgtgattgctccacctccaccaccggagaaac |
51268758 |
T |
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| Q |
117 |
gttcagagaccaccggcgaccaccaacaccatgttgcatggactagtatccctcaagagagatgggaaggagaactgcttgttcaaggacatatt |
211 |
Q |
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| T |
51268759 |
gttcagagaccaccggcgaccaccaacaccatgttgcatggactagtatccctcaagagagatgggaaggagaactgcttgttcaaggacatatt |
51268853 |
T |
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Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 23306701 - 23306895
Alignment:
| Q |
17 |
ggcatctataaaggccaacatgatcttcgagatcatttgaccgtcacaaatgttgttagtccatcgcgtgtgattgctccacctccaccaccggagaaac |
116 |
Q |
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||||||||||||||||||| | |||||| |||||||||||||||| |||||| ||| ||||||||| ||||||||| |||||||| |||||||||||||| |
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| T |
23306701 |
ggcatctataaaggccaacgtaatcttcaagatcatttgaccgtcgcaaatgctgtgagtccatcgtgtgtgattgttccacctcaaccaccggagaaac |
23306800 |
T |
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| Q |
117 |
gttcagagaccaccggcgaccaccaacaccatgttgcatggactagtatccctcaagagagatgggaaggagaactgcttgttcaaggacatatt |
211 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23306801 |
gttcagagaccaccggtgaccaccaacaccatgttgcatggactagtatccatcaagagagatgggaaggagaactgcttgttcaaggacatatt |
23306895 |
T |
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