View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9770_low_6 (Length: 307)

Name: NF9770_low_6
Description: NF9770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9770_low_6
NF9770_low_6
[»] chr7 (8 HSPs)
chr7 (7-263)||(43022127-43022383)
chr7 (203-288)||(42565301-42565386)
chr7 (204-290)||(31026090-31026176)
chr7 (203-288)||(47106201-47106286)
chr7 (203-288)||(13554769-13554854)
chr7 (203-263)||(46993693-46993753)
chr7 (203-263)||(19727938-19727998)
chr7 (203-288)||(18219397-18219482)
[»] chr6 (5 HSPs)
chr6 (203-290)||(13085001-13085088)
chr6 (203-290)||(6284176-6284263)
chr6 (203-288)||(7015154-7015239)
chr6 (203-263)||(1373263-1373323)
chr6 (203-263)||(1381011-1381071)
[»] chr8 (3 HSPs)
chr8 (203-290)||(43254316-43254403)
chr8 (203-263)||(24793204-24793264)
chr8 (203-253)||(11394983-11395033)
[»] chr3 (8 HSPs)
chr3 (203-290)||(53946492-53946579)
chr3 (203-289)||(20198687-20198773)
chr3 (203-288)||(10867163-10867247)
chr3 (203-263)||(14868414-14868474)
chr3 (203-246)||(54450208-54450251)
chr3 (211-290)||(27497232-27497311)
chr3 (203-266)||(24888576-24888639)
chr3 (203-288)||(27968701-27968785)
[»] chr2 (8 HSPs)
chr2 (203-290)||(3119429-3119516)
chr2 (203-290)||(32244201-32244288)
chr2 (203-290)||(11235056-11235143)
chr2 (206-288)||(6267342-6267424)
chr2 (203-281)||(37139156-37139234)
chr2 (211-281)||(38443967-38444037)
chr2 (203-281)||(9669604-9669682)
chr2 (203-290)||(7213108-7213195)
[»] chr5 (6 HSPs)
chr5 (203-288)||(15005647-15005732)
chr5 (203-288)||(8571384-8571468)
chr5 (203-288)||(3199729-3199814)
chr5 (203-263)||(19514093-19514153)
chr5 (203-277)||(4399330-4399404)
chr5 (203-288)||(13916155-13916239)
[»] chr4 (7 HSPs)
chr4 (203-289)||(37615032-37615118)
chr4 (203-290)||(10353413-10353497)
chr4 (203-288)||(9993439-9993524)
chr4 (203-288)||(10426468-10426552)
chr4 (203-263)||(955220-955280)
chr4 (203-263)||(42954119-42954179)
chr4 (203-288)||(4525222-4525306)
[»] chr1 (5 HSPs)
chr1 (203-288)||(39429742-39429827)
chr1 (203-288)||(20795132-20795217)
chr1 (203-263)||(6892883-6892943)
chr1 (203-288)||(49265555-49265640)
chr1 (203-288)||(41503503-41503588)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 43022383 - 43022127
Alignment:
Q  7 ttaaaatgctagaagcttaaaatttaaaatgaaagcatacaaatagtcaatgtcttaggaacttggaagtttccacgaacaagctcctgatattttaatt 106  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43022383 ttaaaatgctagaagcttaaaatataaaatgaaagcatacaaatagtcaatgtcttaggaacttggaagtttccacgaacaagctcctgatattttaatt 43022284  T
Q  107 tcacgcgtttcacatgtgcaatttttcccgtaatattcagtcgtccttcatttttgttataagaaacaaattaacacagccacctgannnnnnnnnaaca 206  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |         ||||    
T  43022283 tcacgcgtttcatatgtgcaatttttcccgtaatattcagtcgtccttcatttttgttataagaaacaaattaacacagccacctaatttttttttaaca 43022184  T
Q  207 agccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  43022183 aaccaaaataaaattatattaccataaacgatagcaatctcttagcataaggtgtgc 43022127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 42565301 - 42565386
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||    
T  42565301 aacaagccaaaatgaaattatattaccaaaaacgatagcaatctcttagcacaaggtgtgcataaaagactactaccaatatacaa 42565386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 31026176 - 31026090
Alignment:
Q  204 acaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    |||||||||||||||||||||||| || || | ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  31026176 acaagccaaaatgaaattatattatcaaaaacaatagcaatctcttagcacaaggtgtgcttaaaagactactaccaatatacaagg 31026090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 47106286 - 47106201
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||    
T  47106286 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgcataaaagactactaccaatatacaa 47106201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 13554854 - 13554769
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    |||||| ||||||||||||||||||||| || | ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||    
T  13554854 aacaaggcaaaatgaaattatattaccaaaaacaatagcaatctcttagtataaggtgtgcataaaagattactaccaatatacaa 13554769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 46993693 - 46993753
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  46993693 aacaagccaaaatgaaattatattaccaaaagcgatagcaatctcttcgcacaaggtgtgc 46993753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 19727938 - 19727998
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||    
T  19727938 aacaagccaaaatgaaattatattaccaaaagtgatagcaatctcttcgcacaaggtgtgc 19727998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 18219482 - 18219397
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||||| |||||||||||||| ||  | | |  ||||||||||||||||| ||||||||| |||||||| |||| ||||| ||||    
T  18219482 aacaagctaaaatgaaattataataataaaggatatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaa 18219397  T

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Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 13085001 - 13085088
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13085001 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgcttaaaagactactaccaacatacaagg 13085088  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 6284176 - 6284263
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    |||||| ||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6284176 aacaagtcaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgcttaaaagactactaccaacatacaagg 6284263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 7015239 - 7015154
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||| |||||||||||||||||||||| || | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  7015239 aacaaaccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaagatgtgcttaaaagactactaccaacatacaa 7015154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 1373323 - 1373263
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1373323 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcacaaggtgtgc 1373263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 1381071 - 1381011
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1381071 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcacaaggtgtgc 1381011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 43254403 - 43254316
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  43254403 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcaaaaggtgtgcttaaaagactactaccaatatacaagg 43254316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 24793204 - 24793264
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  24793204 aacaagccaaaatgaaattatattaccataagcgatatcaatctcttagcacaaggtgtgc 24793264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 11395033 - 11394983
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagca 253  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  11395033 aacaagccaaaatgaaattatattactaaaagcgatagcaatctcttagca 11394983  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 53946579 - 53946492
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    ||||| |||||||||||||||||||||| || | ||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  53946579 aacaaaccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaatgtgtgcttaaaagactactaccaacatacaagg 53946492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 20198773 - 20198687
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaag 289  Q
    |||||||||||||||||||||||||||| ||   ||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  20198773 aacaagccaaaatgaaattatattaccaaaaataatagcaatctcttagaacaaggtgtgcataaaagactactaccaatatacaag 20198687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 10867163 - 10867247
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    |||||||||||||||||||||||||||| || | |||||||||||| |||| ||||||||| ||||||||||||||||| ||||||    
T  10867163 aacaagccaaaatgaaattatattaccaaaa-caatagcaatctctcagcacaaggtgtgcctaaaagactactaccaatatacaa 10867247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 14868474 - 14868414
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  14868474 aacaagccaaaatgaaattatattaccaaaagcgatagcaatctcttcgcacaaggtgtgc 14868414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 54450208 - 54450251
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatct 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54450208 aacaagccaaaatgaaattatattaccataagcgatagcaatct 54450251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 27497232 - 27497311
Alignment:
Q  211 aaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    |||| ||||||||||||| | || | | ||||||||||||| | ||||||||||||||||||||||| ||| ||||||||    
T  27497232 aaaaagaaattatattacaaaaaacaaaagcaatctcttagtacaaggtgtgcttaaaagactactatcaatatacaagg 27497311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 24888639 - 24888576
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgctta 266  Q
    |||||| ||||||||||||||||||||| || | |||||||| |||||| | ||||||||||||    
T  24888639 aacaagtcaaaatgaaattatattaccaaaaacaatagcaatttcttagtacaaggtgtgctta 24888576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 27968701 - 27968785
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||||||||||| |||||||||||||| || | |||||||||||  |||| ||||||||| ||| |||| |||| ||| ||||||    
T  27968701 aacaagccaaaataaaattatattacca-aaacaatagcaatctcccagcacaaggtgtgcctaagagaccactatcaatatacaa 27968785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 3119429 - 3119516
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  3119429 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaagtgtgcttaaaagactactaccaatatacaagg 3119516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 32244288 - 32244201
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||    
T  32244288 aacaagccaaaataaaattatattaccaaaagtgatagcaatctcttagcacaaggtgtgcctaaaagaccactaccaatatacaagg 32244201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 11235143 - 11235056
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    |||||| ||||||||||||||||||||| || | |||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  11235143 aacaaggcaaaatgaaattatattaccaaaaacaatagtaatctcttcgcacaaggtgtgcttaaaagactactaccaacacacaagg 11235056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 6267342 - 6267424
Alignment:
Q  206 aagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    |||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||||| |||| ||||| ||||    
T  6267342 aagctaaaatgaaattatattaccaaaggcgatagcaatttcttagcataaggtgtgcctaaaagaccactatcaacaaacaa 6267424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 37139156 - 37139234
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaa 281  Q
    ||||||| ||||||||||||||||| || | |||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  37139156 aacaagctaaaatgaaattatattaacaaaggcgatagcaatctcttagcacaaggtgtgcctaaaagaccactaccaa 37139234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 38444037 - 38443967
Alignment:
Q  211 aaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaa 281  Q
    |||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  38444037 aaaatgaaattatattaccaaatgcgataacaatctcttagcataaggtgtgcctaaaagaccactaccaa 38443967  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 9669682 - 9669604
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaa 281  Q
    |||||||||||||||||||||||||||| || | ||| |||| |||||||| || |||||| |||||||||||||||||    
T  9669682 aacaagccaaaatgaaattatattaccaaaaacaataacaatttcttagcacaaagtgtgcataaaagactactaccaa 9669604  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 7213195 - 7213108
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    |||||| |||||||||||||||||| || ||   ||||||||||||||| | ||| ||||||||||||||||||| ||| ||||||||    
T  7213195 aacaagtcaaaatgaaattatattatcaaaaataatagcaatctcttagtacaagatgtgcttaaaagactactatcaatatacaagg 7213108  T

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Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 15005647 - 15005732
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||||||||||||||||| |||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  15005647 aacaagccaaaatgaaattttattaccaaaaacaatagcaatctcttagcacaaggtgtgcttaaaagactactaccaatatacaa 15005732  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 8571384 - 8571468
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| |||| ||||| ||||    
T  8571384 aacaagccaaaatgaaattatattaccataagcgatagcaatctctttgcataaggtgtgc-caaaagaccactatcaacaaacaa 8571468  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 3199814 - 3199729
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||||| ||||||||| |||||||| |||| ||||| ||||    
T  3199814 aacaagccaaaataaaattatattaccaaaggcgatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaa 3199729  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 19514153 - 19514093
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  19514153 aacaagccaaaatgaaattatattaccataagcgataacaatctcttagcacaaggtgtgc 19514093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 4399330 - 4399404
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactacta 277  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||  |||||||| ||||    
T  4399330 aacaagctaaaatgaaattatattaccaaacgcgatagcaatctcttaacataaggtgtgtctaaaagaccacta 4399404  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 13916155 - 13916239
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||||||||||| |||||||||||||| || | ||||||||||||||||| ||||||||| |||||||  |||||||| ||||||    
T  13916155 aacaagccaaaataaaattatattaccaaaa-caatagcaatctcttagcacaaggtgtgcctaaaagatcactaccaatatacaa 13916239  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 37615032 - 37615118
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaag 289  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||||||| |||||| |||||||    
T  37615032 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgcctaaaagactaataccaatatacaag 37615118  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 10353413 - 10353497
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaagg 290  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||||| |||||||||||   ||||||||||||||||||||||    
T  10353413 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgctt---agactactaccaacatacaagg 10353497  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 9993524 - 9993439
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||| |||||||| |||||||| ||||||    
T  9993524 aacaaaccaaaatgaaattatattaccaaaagcaatagcaatctcttagcacaagatgtgcctaaaagaccactaccaatatacaa 9993439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 10426552 - 10426468
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    |||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  10426552 aacaagccaaaatgaaattatattaccaaaata-atagcaatctcttagcataaggtgtgcctaaaagaccactaccaatatacaa 10426468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 955280 - 955220
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  955280 aacaagccaaaatgaaattatattaccaaaagcgatagcaatctcttcgcacaaggtgtgc 955220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 42954179 - 42954119
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  42954179 aacaagccaaaatgaaattatattaccataaacgataacaatctcttagcacaaggtgtgc 42954119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 4525306 - 4525222
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||||| ||||||| ||||||||| || || | |||||||||||| |||| ||||||||| ||| |||| |||||||| ||||||    
T  4525306 aacaagctaaaatgagattatattaacacaa-caatagcaatctctcagcacaaggtgtgcctaagagaccactaccaaaatacaa 4525222  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 39429742 - 39429827
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    |||||| |||||||||||||||||||||  | | ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||    
T  39429742 aacaagtcaaaatgaaattatattaccaacaacaatagcaatctcttagcacaaggtgtgcataaaagactactaccaatatacaa 39429827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 20795132 - 20795217
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    |||||| ||||||||||||||||||||| || | ||||||||||||||||| ||||||||  || |||||||||||||| ||||||    
T  20795132 aacaaggcaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtggatagaagactactaccaatatacaa 20795217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 6892943 - 6892883
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgc 263  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  6892943 aacaagccaaaatgaaattatattaccaaaagcgatagcaatctcttcgcacaaggtgtgc 6892883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 49265640 - 49265555
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    |||||| |||||||||||||||||||||  | | ||||||||||||||| | ||||||||| ||||||||||||| ||| ||||||    
T  49265640 aacaaggcaaaatgaaattatattaccaacaacaatagcaatctcttagtacaaggtgtgcataaaagactactatcaatatacaa 49265555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 41503588 - 41503503
Alignment:
Q  203 aacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcataaggtgtgcttaaaagactactaccaacatacaa 288  Q
    ||||||||||||| ||||||||||| || | |  |||||||| |||||||| ||||| ||| |||||||| |||| ||||| ||||    
T  41503588 aacaagccaaaataaaattatattatcaaaggttatagcaatttcttagcacaaggtatgcctaaaagaccactatcaacaaacaa 41503503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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