View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9770_low_8 (Length: 289)
Name: NF9770_low_8
Description: NF9770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9770_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 11774592 - 11774323
Alignment:
| Q |
16 |
gtatctagttcaaaattcagtc-agttacatcaatttttgttgacctaattttctctcgggaccaccggagtgagtagtaaacgataacgaaaaagtaga |
114 |
Q |
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| T |
11774592 |
gtatctagttcaaaattcagtttaattacatcaatttttgttgacctaactttctctcaggaccaccagagggagtaataaacaataacgaaaaagtaga |
11774493 |
T |
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| Q |
115 |
gagaaaa---cctgaatatacgagcaatcaaaatacttgagtaggtcagtatattttgcaacatctacatagcaatatctgtatatctgaacctttcgat |
211 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11774492 |
gagaaaagaacctgaatatatgagcaatcaaaatacttgagtaggtcagtatattttgcaacatctacatagcaatatctgtatatctgaacctttcgat |
11774393 |
T |
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| Q |
212 |
gaagagaatgagattccttatcatacctacaaaaactgattccacaatccaaacaaaacacattcttctc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11774392 |
gaagagaatgagattccttatcatacctacaaaaactgattccacaatccaaacaaaacacattcttctc |
11774323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 16448159 - 16448215
Alignment:
| Q |
16 |
gtatctagttcaaaattcagtc-agttacatcaatttttgttgacctaattttctct |
71 |
Q |
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|||||| ||||||||||||||| || |||||||| ||||||||||| || ||||||| |
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| T |
16448159 |
gtatctggttcaaaattcagtccagatacatcaacttttgttgacccaactttctct |
16448215 |
T |
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