View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9771_high_15 (Length: 256)
Name: NF9771_high_15
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_high_15 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 35195245 - 35195486
Alignment:
| Q |
17 |
cataggtgcacatattaacaatctattgatgctaaggtttatgagaga-tatttggcaactatgcgaagtagcattatatatcgatatgagaaagatagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35195245 |
cataggtgcacatattaacaatctattgatgctaaggtttacgagagaatatttggcaactacgcgaagtagcattatatatcggtatgagaaagatagt |
35195344 |
T |
|
| Q |
116 |
tgaaagatcatcacattagatccaaaaacaactaaataaaaagaatttgacaccatattttaaccgaaacccttaaacattatatataca-nnnnnnnnn |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |
|
|
| T |
35195345 |
tgaaagatcatcacattagatccaaaaacaactaaataaaaagaatttgacaccacattttaaccgaaatccttaaacattatatataaattttttattt |
35195444 |
T |
|
| Q |
215 |
nnncatccaaaatgaaacttctaacacacacatataccaaca |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35195445 |
tttcatccaaaatgaaacttctaacacacacatataccaaca |
35195486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University