View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9771_high_18 (Length: 250)
Name: NF9771_high_18
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 53660246 - 53660485
Alignment:
| Q |
1 |
caagagagatggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgnnnnnnnctaaaattcatgttagcttt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53660246 |
caagagagagggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgaaaaaaactaaaattcatgttagcttt |
53660345 |
T |
|
| Q |
101 |
aatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaacttgtctaggttcgtcttaaacttcctcatccaaacctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53660346 |
aatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaactagtctaggttcgtcttaaacttcctcatccaaacctgt |
53660445 |
T |
|
| Q |
201 |
aggttatacatttaaaaatttagaagtaaccaaccctatg |
240 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53660446 |
aggttatacattttaaaatttagaagtaaccaaccctatg |
53660485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University