View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9771_high_28 (Length: 220)
Name: NF9771_high_28
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_high_28 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 37584781 - 37584573
Alignment:
| Q |
6 |
aaatcaatgatgccttctcccaataagaaagtaaccagggggaaagagggttttttgtactcttccactgtagtctcactacataaacactctctctaat |
105 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
37584781 |
aaatcaatgatgccttctcccaataaaaaagtaaccagggg-aaagagggttttttgtactcttctactgcagtctcactacataaacactctctctaat |
37584683 |
T |
|
| Q |
106 |
actcacgtttttatttgatgaaataaatatgaatccctcactttggaaataagtccaatatgaaattgtgggagtcacgttttcaccttgtaagagagag |
205 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37584682 |
actcacgtttt-----gatgaaataaatatgaatccctcactttggaaataagtccaatatgaaattgtgggagtcacattttcaccttgtaagagagag |
37584588 |
T |
|
| Q |
206 |
tattagaaagaatgt |
220 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37584587 |
tattagaaagaatgt |
37584573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University