View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9771_high_3 (Length: 434)
Name: NF9771_high_3
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 2090900 - 2090497
Alignment:
| Q |
18 |
atgcatccttatcttttgtctatgtataattaaaaatattaccattattttaattttctaaacctaaaactattttgccatgtgtgtcgagtcatgtgtc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |
|
|
| T |
2090900 |
atgcatccttatcttttgtctatgtataattaaaaatattaccattattttaattttctaaacctgaaactattttgtcgtgtgtgtcgagtcatgtgtc |
2090801 |
T |
|
| Q |
118 |
acgctttataaaaatcagatcgtaaaacaatagagacatcatcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaa |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090800 |
acgctttataaaaattagatcgtaaaacaatagagacatca---cactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaa |
2090704 |
T |
|
| Q |
218 |
atggagggtaaaatttttagaaagaagaggacaatggggataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2090703 |
atggagggtaaaatttttagaaagaagaggacaatggggataaggaagcctaaatccttattcaaccatctccccacagagcttcaaacaaaaatctttg |
2090604 |
T |
|
| Q |
318 |
gtgggctatctatgaaggatcaatcaaaggctatgtgtgtctcgcactcatggcgtaatcgcattctaatcacaacacttccaaaggagtatccattaca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
2090603 |
gtgggctatctatgaaggatcaatcaaaggctatgtgtgtctcgcactcatggcgtaatcgcatcctaaccacaacacttccaaaggagtatccattaca |
2090504 |
T |
|
| Q |
418 |
acctttg |
424 |
Q |
| |
|
||||||| |
|
|
| T |
2090503 |
acctttg |
2090497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 393
Target Start/End: Original strand, 2878654 - 2878809
Alignment:
| Q |
238 |
aaagaagaggacaatggggataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggat |
337 |
Q |
| |
|
||||||||| || ||||||| ||||||||| | |||||| |||||| |||||||| | | ||||||| ||||| ||| || || | || || ||||| |
|
|
| T |
2878654 |
aaagaagagaactatggggaaaaggaagcccagatccttcttcaacaatctccccataaatattcaaacgaaaatattttgtaggttgtcgttggaggat |
2878753 |
T |
|
| Q |
338 |
caatcaaaggctatgtgtgtctcgcactcatggcgtaatcgcattctaatcacaac |
393 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||| | |||||| |||||| |
|
|
| T |
2878754 |
caatcaaaagctatgtgtgtctcgaatgaatggcgtaatcacgttctaaacacaac |
2878809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 2727373 - 2727332
Alignment:
| Q |
331 |
gaaggatcaatcaaaggctatgtgtgtctcgcactcatggcg |
372 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
2727373 |
gaaggatcaatcaaaagctatgtgtgtctcacactcatggcg |
2727332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University