View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_high_30 (Length: 212)
Name: NF9771_high_30
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_high_30 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 24247065 - 24247242
Alignment:
| Q |
19 |
ggagaccgttgcaagaaccaacgagaatgcggctatagaacgtagtatttagttgataaagggaagagtggtcaaaggagaacgtggcatcagaggtgaa |
118 |
Q |
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| T |
24247065 |
ggagaccgtcacaagaaccaacgagaatgcggctatagaacgtagtatttagttgataaaggaaagagtgatcaaaggagaacgtggcatcagaggtgaa |
24247164 |
T |
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| Q |
119 |
actagagttgagttgaaaagagtccaatgggtaagacattacagttaactttggtgggaagttcaatgagcttgtgac |
196 |
Q |
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| T |
24247165 |
actagagttgagttgaaaagagtccaatgggtaagacattacagttaactttggtgggtagttcaatgagcttgtgac |
24247242 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 24243489 - 24243567
Alignment:
| Q |
90 |
tcaaaggagaacgtggcatcagaggtgaaactagagttgagttgaaaagagtccaatgggtaagacattacagttaact |
168 |
Q |
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| T |
24243489 |
tcaaaggagaacataccatcgtaggtgaaactagatatgagtttaagagagtccaatggataagacgttacacttaact |
24243567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 40989 - 41044
Alignment:
| Q |
110 |
agaggtgaaactagagttgagttgaaaagagtccaatgggtaagacattacagtta |
165 |
Q |
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| T |
40989 |
agaggtaaaaatagagtcgagttgaagagagtcgaatggataagacattacagtta |
41044 |
T |
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