View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_high_5 (Length: 406)
Name: NF9771_high_5
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 31727833 - 31727504
Alignment:
| Q |
18 |
taaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacaaaaaatcagtaactcatcatcaaattggcataaaaccaataagacat |
117 |
Q |
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| T |
31727833 |
taaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacaaaaaatcagtaactcatcatcaaattggcataaaaccaataagacat |
31727734 |
T |
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| Q |
118 |
ggtagactactagaatctaatagctttgcactaaactacattaatatttttccactattacannnnnnnnnnnnnnnnatcaaaactataaatatttggt |
217 |
Q |
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| T |
31727733 |
ggtagactactagaatctaatagctttgcactaaactatattaatatttttccactattaca-----tttttttttttatcaaaactataaatatttggt |
31727639 |
T |
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| Q |
218 |
ctaagaaataatgccaagacatgcaaatttagttgtgaaaagcgattttgtatctcaataactcttattagnnnnnnnnaaatataaaaaatataacatt |
317 |
Q |
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| T |
31727638 |
ctaagaaataatgccaagacatgcaaatttagttgtgaaaagcgattttgtatctcaataactcttattagttttttttaaatataaaaaatataacatt |
31727539 |
T |
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| Q |
318 |
ttttagctagtgactaatatagtatattcatattg |
352 |
Q |
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| T |
31727538 |
ttttagctagtgactaatatagtatattcatattg |
31727504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 39083001 - 39082941
Alignment:
| Q |
18 |
taaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacaaaaaatca |
78 |
Q |
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| T |
39083001 |
taaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatca |
39082941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 39082950 - 39082869
Alignment:
| Q |
99 |
cataaaaccaataagacatggtagactactagaatctaatagctttgcactaaactacatt-aatatttttccactattaca |
179 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| | |||||| |
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| T |
39082950 |
cataaaatcaataagacatggtagactactagaatctaatagctttgcaccaacctacattcaatatttttcctccattaca |
39082869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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