View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_high_6 (Length: 364)
Name: NF9771_high_6
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 53660208 - 53659869
Alignment:
| Q |
8 |
tgttcgtcctaacgaaataagtatctcactgatttctttgtgacataggtcacattgaccaaatcgcgtaaacttttgtgtcttgttcttccctcttctt |
107 |
Q |
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| T |
53660208 |
tgttcgtcctaacgaaataagtatctcactgatttctttgtgacgtaggtcacattgaccaaatcgcgtaaacttttgtgtcttgttctttcctcttttt |
53660109 |
T |
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| Q |
108 |
cctttgatcttccaacttgtgtgtggtttattcttgtctttg-tcaaaacaattacaactaatttgtgatctctcttacatatgaaaggttattgagcat |
206 |
Q |
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| T |
53660108 |
cctttgatcttccgacttgtgtgtggtttattcttgtctttggtcaaaacaattacaactaatttgtgatctctcttacatatgaaaggttattgagcat |
53660009 |
T |
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| Q |
207 |
aaaccttatgatcacaaagctgatgtctttagctttgcaattgttctctgggagctgcttacaagaaaggtaatgcttcttgcaatttttcttttctttt |
306 |
Q |
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| T |
53660008 |
aaaccatatgatcacaaagctgatgtctttagctttgcaattgttctctgggagctgcttacaagaaaggtaatgcttcttgcaatttttcttttctttt |
53659909 |
T |
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| Q |
307 |
cgctcattggatttcttttgcttgtatctatagagcccta |
346 |
Q |
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| T |
53659908 |
cgctcattggatttcttttgcttgtatccatagagcccta |
53659869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 8449516 - 8449427
Alignment:
| Q |
191 |
aaaggttattgagcataaaccttatgatcacaaagctgatgtctttagctttgcaattgttctctgggagctgcttacaagaaaggtaat |
280 |
Q |
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| T |
8449516 |
aaaggttattgagcataagccatataaccagaaagctgatgttttcagctttgggattattatttgggagctgctcacaagaaaggtaat |
8449427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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