View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_11 (Length: 433)
Name: NF9771_low_11
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 10379189 - 10378767
Alignment:
| Q |
11 |
cagagaacatggaccttcctttgagaatgtcagcatctatactatgccattgacacaacagagatcaagtgcatgtatcatgttaacatgataatctaaa |
110 |
Q |
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| T |
10379189 |
cagagaacatggaccttcctttgagaatgtcagcatctatactatgccattgacacaacagagatcaagtgcatgtatcatgttaacatgataatctaaa |
10379090 |
T |
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| Q |
111 |
tcagaaaagggttgtatgagagcaccaaacacaaacaaccatagattttggcatctagtatcctttatttgaaggattctctcggtagtaaggaaggaac |
210 |
Q |
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| T |
10379089 |
tcagaaaagggttgtatgagagcaccaaacacaaacaaccatagattttggcatctagtatcctttatttgaaggattctctcggtagtaaggaaggaac |
10378990 |
T |
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| Q |
211 |
tccaattcttgcaagcaagcctaacattcttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaagatttcgga |
310 |
Q |
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| T |
10378989 |
tccaattcttgcaagcaagcctaacattcttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaagatttcgga |
10378890 |
T |
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| Q |
311 |
ctgtacttcaacacattccttagtgtagttgattttggatggttcagttgttgatggcttggctgcttgtggtggcatttttcgtgattatcgaggatct |
410 |
Q |
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| T |
10378889 |
ctgtacttcaacacattccttagtgtagttgattttggatggttcagttgttgatggcttggctgcttgtggtggcatttttcgtgattatcgaggatct |
10378790 |
T |
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| Q |
411 |
tttttgggttgtttttcttacaa |
433 |
Q |
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| T |
10378789 |
tttttgggttgtttttcttacaa |
10378767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 10367500 - 10367337
Alignment:
| Q |
175 |
ttatttgaaggattctctcggtagtaaggaaggaactccaattcttgcaagcaagcctaacattcttgagactttcaaatggaagacaattcaaacacaa |
274 |
Q |
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| T |
10367500 |
ttatttgaaggattctctcagtggtaaggaaggaactccaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaa |
10367401 |
T |
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| Q |
275 |
ttcaagaatgtcatcaggaagaagaaagatttcggactgtacttcaacacattccttagtgtag |
338 |
Q |
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| T |
10367400 |
ttcaagaatgtcatcaggaagaagaaagagtccagactctacttcaacgcattcctttgtgtag |
10367337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 43657687 - 43657570
Alignment:
| Q |
204 |
aaggaactccaattcttgcaagcaagcctaacattcttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaaga |
303 |
Q |
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||||||||||| || ||||| |||||||| |||| | ||||||||| ||| || || || |||||||| ||||||||| |||| ||||||||||||| |
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| T |
43657687 |
aaggaactccattttttgcacacaagcctagcattatcgagactttcgcatgcaacacgatccaaacacatttcaagaataccatcgggaagaagaaaga |
43657588 |
T |
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| Q |
304 |
tttcggactgtacttcaa |
321 |
Q |
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| T |
43657587 |
tttcggactttacttcaa |
43657570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 429
Target Start/End: Complemental strand, 31329456 - 31329380
Alignment:
| Q |
350 |
tggttcagttgttgatggcttggctgcttgtggtggcatttttcgtgattatcgaggatcttttttgggttgtttttctt |
429 |
Q |
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| T |
31329456 |
tggttcagttgt--atggcttagctgcttgtggtagtatttttcatgaatatcgaggat-ttttttgggttgtttttctt |
31329380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 429
Target Start/End: Complemental strand, 31336177 - 31336101
Alignment:
| Q |
350 |
tggttcagttgttgatggcttggctgcttgtggtggcatttttcgtgattatcgaggatcttttttgggttgtttttctt |
429 |
Q |
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|||||||||||| ||||||| |||||||||||| | ||||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
31336177 |
tggttcagttgt--atggcttagctgcttgtggtagtatttttcatgaatatcgaggat-ttttttgggttgtttttctt |
31336101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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