View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_12 (Length: 429)
Name: NF9771_low_12
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 15527161 - 15527470
Alignment:
| Q |
1 |
ttggtggtgtacgtagtggtgtttgtatcataacttttcaaactgcttctatcattatcaccctctaagtatttcttgtgctttataatgtgtttttaaa |
100 |
Q |
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| T |
15527161 |
ttggtggtgtacgtagtggtgtttgtatcataacttttcaaactgcttctatcattatcaccctcaaagtatttcttgtgctttataatgtgtttttaaa |
15527260 |
T |
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| Q |
101 |
acaaaattctttttgcttattaaaataaataatgaaaaaagtgatactatatttatactactttcttctc--ttaaccatgacaaccaggagaatcaaac |
198 |
Q |
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| T |
15527261 |
acaaaattctttttgcttattaaaataaataatgaaaaaagtgatac--tatttatactactttcttttcatataaccatgacaacaagg---atcaaac |
15527355 |
T |
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| Q |
199 |
acttcattttctactatttataataacattctttttgtttattaaaaaagaaactaaaatgagataagcaattctttttctactttcagaacttggagtt |
298 |
Q |
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| T |
15527356 |
atttcgttttctactatttatactaaaattctttttgtctattaaaaaagaaactaaaatgagaaaagtaattctttttctactttcagaacttggagtt |
15527455 |
T |
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| Q |
299 |
gaattcgaacacttc |
313 |
Q |
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| T |
15527456 |
gaattcgaacacttc |
15527470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 15527515 - 15527613
Alignment:
| Q |
315 |
agtattattcttacgctttagctaaatagcataacaactatacctggaaatgcgtaaagatgactttaattttctcctacacttgcctgcacaaatatc |
413 |
Q |
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| T |
15527515 |
agtattattcttaccctttagctaaatagcataaacactatacctggatatacgtaaagatgactttaactttctcctacacttgcctgcacaaatatc |
15527613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 15538333 - 15538407
Alignment:
| Q |
339 |
aatagcataacaactatacctggaaatgcgtaaagatgactttaattttctcctacacttgcctgcacaaatatc |
413 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |
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| T |
15538333 |
aatagcaaaacaactatacctggaaatgcgtaaagatgactttaattttttcttacagttgcctgcacaaatatc |
15538407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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