View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_13 (Length: 424)
Name: NF9771_low_13
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 2 - 408
Target Start/End: Original strand, 38226357 - 38226763
Alignment:
| Q |
2 |
cgagagagatgatgtactcacggttcagaaccgtcgctaaaaacctcaaatccaccacaaaacccttctctttcaccacagccaccacaaaaaccaccgt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
38226357 |
cgagagagatgatgtactcacggttcagaaccgtcgctaaaaacctcaaatccaccacaaaacccttctctttcaccaccgccaccacaacaaccaccgt |
38226456 |
T |
|
| Q |
102 |
atcatcctccgaatttccacagaatctgaccgaactccgagctcgtcttgcaagggaatccccatccctatcagccttcgtttccttgaaatcgaacaac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
38226457 |
atcatcctccgaatttccacagaatctgaccgaactccgagctcgtcttgcaagggaatccccatccctatcagacttcatttccttgaaatcgaacaac |
38226556 |
T |
|
| Q |
202 |
gcgtactctgttgaagtgggaacgaagaagaatccgcttccgaaaccgaaatggatgaaggaatcgattcctggtggttggaagtatgtgcagattaaga |
301 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226557 |
gcatactctgttgaagttggaacgaagaagaatccgcttccgaaaccgaaatggatgaaggaatcgattcctggtggttggaagtatgtgcagattaaga |
38226656 |
T |
|
| Q |
302 |
agaaactgagagaattgaagcttcatacggtttgtgaggaggcgaagtgccctaatatgggagagtgttggtctggtggtgaaacgggtaccgctaccgc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226657 |
agaaactgagagaattgaagcttcatacggtttgtgaggaggcgaagtgccctaatatgggagagtgttggtctggtggtgaaacgggtaccgctaccgc |
38226756 |
T |
|
| Q |
402 |
tactatt |
408 |
Q |
| |
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||||||| |
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| T |
38226757 |
tactatt |
38226763 |
T |
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