View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_14 (Length: 424)
Name: NF9771_low_14
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 13229786 - 13230182
Alignment:
| Q |
19 |
cataaacccaaaatcgatgaacaccatcaatgaagctataccttttctcaattggtatattgtatggtttctgcacctcaaaatttgcttcagtcaatgg |
118 |
Q |
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| T |
13229786 |
cataaacccaaaatcgatgaacaccatcaatgaagctataccttttctcaattggtatattgtatggtttctgcacctcaaaatttgcttcagtcaatgg |
13229885 |
T |
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| Q |
119 |
cacagaggtaaaaccatcagtaggatcatcaccatgtacaagcactgtattttctttagacacaagaatgaacaaagatagaatcacaaaaatgtaagag |
218 |
Q |
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| T |
13229886 |
cacagaggtaaaaccatcagtaggatcatcaccatgtacaagcactgtattttctatagacacaagaatgaacaaagatagaatcacaaaaatgtaagag |
13229985 |
T |
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| Q |
219 |
ctatacatttttccttcaatttctccttcttgatcccttcagtagaatgttatgagtttttgtagagaagtataagggcatatatatagccacatcacac |
318 |
Q |
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| T |
13229986 |
ctatacatttttacttcaatttctcctacttgattccttcaatagaatattgtgagtcctt-tagagaagtataaggtcatatatatagccacatcacac |
13230084 |
T |
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| Q |
319 |
ataagagtctaagagttttaaaannnnnnnnattagggttttgtattggattaattgttcttataaaaatgacttgtaagacgagaggtgcctttgct |
416 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
13230085 |
ataagagtctaagagttttaaaatatattttattagggttttgtattggattaattgttcttataaaaatgacttgtaagacaagaggtgccattgct |
13230182 |
T |
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