View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9771_low_15 (Length: 417)
Name: NF9771_low_15
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_15 |
 | |
|
| [»] scaffold0004 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 37265435 - 37265205
Alignment:
| Q |
13 |
cagaagctaggatttgaaccaacatcacattcacagcaaccttcaatctcccaaattttccaaccttacatcttcacttgagaaccaaccttcaactttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37265435 |
cagaagctaggatttgaaccaacatcacattcacagcaaccttcaatctcccaaattttccaaccttacatcttcacttgagaaccaaccttcaactttt |
37265336 |
T |
|
| Q |
113 |
ggcaccttaatcacacatcaacaaaaatacaaacctttccccaaatttcccacaaagggccaaggcaagttattccaataaactatcaatcccaaaaatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37265335 |
ggcaccttaatcacacatcaacaaaaatacaaacctttccccaaatttcccacaaagggccaaggcaagttattccaataaactatcaatcccaaaaatt |
37265236 |
T |
|
| Q |
213 |
catatgctcgtgtcaataatatgcatccagt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37265235 |
catatgctcgtgtcaataatatgcatccagt |
37265205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 37265140 - 37265049
Alignment:
| Q |
308 |
ctcaagtattccctttcctttaattttttgtaatggctgtattctctttccttgtcttacccagaattgcaaaacacacccacgaccttatg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37265140 |
ctcaagtattccctttcctttaattttttgtaatggctgtattctctttccttgtcttacccagaattgcaaaacacacccacgaccttatg |
37265049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 34957 - 34740
Alignment:
| Q |
21 |
aggatttgaaccaacatcacattcacagcaaccttcaatctcccaaattttccaaccttacatcttcacttgagaaccaaccttcaacttttggcacctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34957 |
aggatttgaaccaacatcacattcacagcaaccttcaatctcccaaattttccaaccttacatcttcacttgagaaccaaccttcaacttttggcacctt |
34858 |
T |
|
| Q |
121 |
aatcacacatcaacaaaaatacaaacctttccccaaatttcccacaaagggccaaggcaagttattccaataaactatcaatcccaaaaattcatatgct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34857 |
aatcacacatcaacaaaaatacaaacctttccccaaatttcccacaaagggctaaggcaagttattctaataaactatcaatcccaaaaattcatatgct |
34758 |
T |
|
| Q |
221 |
cgtgtcaataatatgcat |
238 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
34757 |
cgtgccaataatatgcat |
34740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 34666 - 34575
Alignment:
| Q |
308 |
ctcaagtattccctttcctttaattttttgtaatggctgtattctctttccttgtcttacccagaattgcaaaacacacccacgaccttatg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34666 |
ctcaagtattccctttcctttaattttttgtaatggctgcattctctttccttgtcttacccagaattgcaaaacacacccacgaccttatg |
34575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 308 - 393
Target Start/End: Original strand, 6385154 - 6385239
Alignment:
| Q |
308 |
ctcaagtattccctttcctttaattttttgtaatggctgtattctctttccttgtcttacccagaattgcaaaacacacccacgac |
393 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6385154 |
ctcaattattccctttcctttaattttttgtaatggctgtattctctttccttgtcttacccagaattgcaaaacacacccacgac |
6385239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University