View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_16 (Length: 408)
Name: NF9771_low_16
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 33 - 408
Target Start/End: Original strand, 45452362 - 45452739
Alignment:
| Q |
33 |
tggtccacatagaggagaggattttaccttaacacaagcaatgataaatgctgatttttggatcatgtttgtttctatcgtcttaggctgtgggtcggga |
132 |
Q |
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| T |
45452362 |
tggtccacatagaggagaggattttaccttaacacaagcaatggtaaatgctgatttttggatcatgtttgtttctatcgtcttaggctgtgggtcggga |
45452461 |
T |
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| Q |
133 |
ttgacaatgataaacaacatgggtcagatttgtcaatctttgggcgacaacaatgttaacatttatgtatcagttatcagcatatccaatttcctaggcc |
232 |
Q |
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| T |
45452462 |
ttgacaatgataaacaacatgggtcagatttgtcaatctttgggcgacaacaatgttaacatttatgtatcggttatcagcatatccaatttcctaggcc |
45452561 |
T |
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| Q |
233 |
gtgttggtggcggctacttctctgaagttatagtgaggtgagatctgtttaatcttttttcttcttctctattctattttgagac--nnnnnnntatctc |
330 |
Q |
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| T |
45452562 |
gtgttggtggcggctacttctctgaagttatagtgaggtgagatctgtttaatcttttttcttcttctctattctattttgagacaaaaaaaaaaatctc |
45452661 |
T |
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| Q |
331 |
taatattccgatctatttaatagctgaaaaatgaaaatatcaatttgattttcaaaattttcaaatattgatcaaatt |
408 |
Q |
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| T |
45452662 |
caatactccgatctatttaatagctgaaaaatgaaaatatcaatttgattttcaaaattttcaaatattgatcaaatt |
45452739 |
T |
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