View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_18 (Length: 400)
Name: NF9771_low_18
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 22573360 - 22573721
Alignment:
| Q |
20 |
atcactaaagaaaatctaaaatttatttcatatcttacaagcaaaatgttcaataaaataaattacatgacaacttcaactttatccatcagaaaaagca |
119 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
22573360 |
atcactaagaaaaatctaaaatttatttcatatcttacaagcaaaatgttcaataaaacaaattacatgacaacttcaactctatccatcagaaaaagca |
22573459 |
T |
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| Q |
120 |
aaatatcattctcattcaacattaaaaacaaaaagaaacactaatgggcggtttcatctgcatcatcatccactggcagctcattcaaatcgaaatctcg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22573460 |
aaatatcattctcattcaacattaaaaacaaaaagaaacactaatgggcggtttcatctgcatcatcttccactggcagctcattcaaatcgaaatctcg |
22573559 |
T |
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| Q |
220 |
aacaacatttaaccctaattcatgaggcaggttgttgttctcatctgtttcatcatcttcaccagtgttgttgttctcttcattatcatcattggaggca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22573560 |
aacaacatttaaccctaattcatgaggcaggttgttgttcttatctgtttcatcatcttcaccagtgttgttgttctcttcattatcatcattggaggca |
22573659 |
T |
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| Q |
320 |
ggttgattggaagcttgtgaattttgaatgactaggccattcggaatctttaacctcgccac |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22573660 |
ggttgattggaagcttgtgaattttgaatgactaggccattcggaatctttaacctcgccac |
22573721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 22563871 - 22563942
Alignment:
| Q |
69 |
tcaataaaataaattacatgacaacttcaactttatccatcagaaaaagcaaaatatcattctcattcaacat |
141 |
Q |
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||||||| | || ||||||| |||||||| ||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
22563871 |
tcaataagacaatttacatggcaacttcaggtttatccatcagaaaaagctaaatatcactctc-ttcaacat |
22563942 |
T |
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