View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_19 (Length: 387)
Name: NF9771_low_19
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 370
Target Start/End: Complemental strand, 45099455 - 45099100
Alignment:
| Q |
15 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
114 |
Q |
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| T |
45099455 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
45099356 |
T |
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| Q |
115 |
aatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
214 |
Q |
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| T |
45099355 |
aatgtaggaggtatgaaaataactccttttaatgacaccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
45099256 |
T |
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| Q |
215 |
cagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgactgctcaacagatgaatagggaaaa |
314 |
Q |
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| T |
45099255 |
cagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcgcctgaaaatgtttacatgactgctcaacagatgaatagggaaaa |
45099156 |
T |
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| Q |
315 |
ctcaagtttagcttcaaggtttaatataacatggaattttcctgtggctcgtgatg |
370 |
Q |
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| T |
45099155 |
ctcaagtttagcttcaaggtttaatataacatggaattttcctgtggctcgtgatg |
45099100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 91 - 311
Target Start/End: Original strand, 17348638 - 17348858
Alignment:
| Q |
91 |
gttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttgg |
190 |
Q |
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| T |
17348638 |
gttttagaaactattcataggattaatgttggaggtgaaaaattaactccttttaatgataccctttggagaacatggattcctgataaggattttctgg |
17348737 |
T |
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| Q |
191 |
tttttaaggaagcagctaaacatgcagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgac |
290 |
Q |
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| T |
17348738 |
tttttaaggatgcagctaaggctgtagtgagcactcacacaccagattatcagaaagggggcgcggctagagagatcgcgccggatagtgtttatatgac |
17348837 |
T |
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| Q |
291 |
tgctcaacagatgaataggga |
311 |
Q |
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| T |
17348838 |
tgctcaggagatgaataggga |
17348858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 17363885 - 17363945
Alignment:
| Q |
90 |
ggttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgat |
150 |
Q |
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| T |
17363885 |
ggttttagaaactattcataggattaacgttgatggtttgaaaataactccctttaatgat |
17363945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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