View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9771_low_26 (Length: 332)

Name: NF9771_low_26
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9771_low_26
NF9771_low_26
[»] chr1 (35 HSPs)
chr1 (95-305)||(30655565-30655776)
chr1 (1-151)||(15840932-15841082)
chr1 (71-153)||(32876644-32876726)
chr1 (68-152)||(41403017-41403101)
chr1 (101-158)||(31585773-31585830)
chr1 (101-158)||(41920463-41920520)
chr1 (101-145)||(38544764-38544808)
chr1 (87-143)||(46814495-46814551)
chr1 (87-142)||(7857650-7857705)
chr1 (68-151)||(36132752-36132835)
chr1 (187-300)||(2660704-2660817)
chr1 (101-142)||(5459172-5459213)
chr1 (101-158)||(19598647-19598704)
chr1 (101-145)||(17033597-17033641)
chr1 (87-143)||(24658926-24658982)
chr1 (101-145)||(46692845-46692889)
chr1 (101-144)||(4651791-4651834)
chr1 (68-139)||(13987599-13987670)
chr1 (68-139)||(38564880-38564950)
chr1 (67-149)||(33034668-33034750)
chr1 (109-158)||(5389434-5389483)
chr1 (101-158)||(30685917-30685974)
chr1 (72-144)||(9081532-9081604)
chr1 (101-145)||(9313315-9313359)
chr1 (87-143)||(27031868-27031924)
chr1 (109-145)||(27102210-27102246)
chr1 (264-303)||(8133581-8133620)
chr1 (72-142)||(6583245-6583315)
chr1 (102-144)||(42374175-42374217)
chr1 (82-142)||(22200000-22200060)
chr1 (105-145)||(24449956-24449996)
chr1 (101-145)||(24684504-24684548)
chr1 (80-148)||(33019553-33019621)
chr1 (102-146)||(34774883-34774926)
chr1 (101-145)||(46603403-46603447)
[»] chr3 (33 HSPs)
chr3 (9-140)||(24991946-24992077)
chr3 (9-174)||(30127181-30127347)
chr3 (74-146)||(24099352-24099424)
chr3 (101-158)||(17550968-17551025)
chr3 (101-158)||(19176513-19176570)
chr3 (89-142)||(34475783-34475836)
chr3 (68-152)||(2782088-2782172)
chr3 (94-174)||(19295863-19295942)
chr3 (72-144)||(31424218-31424290)
chr3 (65-127)||(51065886-51065948)
chr3 (101-158)||(43012386-43012443)
chr3 (101-145)||(5556581-5556625)
chr3 (101-145)||(14755291-14755335)
chr3 (101-141)||(14879446-14879486)
chr3 (72-136)||(24712620-24712684)
chr3 (101-145)||(47945717-47945761)
chr3 (68-139)||(16285044-16285115)
chr3 (101-139)||(20710740-20710778)
chr3 (68-152)||(3968569-3968653)
chr3 (68-152)||(4000152-4000236)
chr3 (101-145)||(9584079-9584123)
chr3 (100-148)||(17324180-17324228)
chr3 (101-145)||(33143975-33144019)
chr3 (105-145)||(37123397-37123437)
chr3 (105-145)||(39021302-39021342)
chr3 (101-141)||(40023602-40023642)
chr3 (264-294)||(24099152-24099182)
chr3 (101-143)||(45398807-45398849)
chr3 (108-145)||(823461-823498)
chr3 (108-145)||(20611801-20611838)
chr3 (87-140)||(23328381-23328434)
chr3 (80-172)||(19133744-19133835)
chr3 (84-140)||(28970036-28970092)
[»] chr6 (16 HSPs)
chr6 (67-152)||(34105390-34105475)
chr6 (68-172)||(20970406-20970508)
chr6 (87-145)||(32935365-32935423)
chr6 (101-145)||(26216045-26216089)
chr6 (87-145)||(26534745-26534803)
chr6 (87-148)||(9239221-9239282)
chr6 (101-145)||(9224052-9224096)
chr6 (100-148)||(34090373-34090421)
chr6 (105-158)||(3117508-3117561)
chr6 (87-136)||(20499916-20499965)
chr6 (104-145)||(21266127-21266168)
chr6 (87-145)||(33968639-33968697)
chr6 (87-133)||(34092792-34092838)
chr6 (104-145)||(20701829-20701870)
chr6 (100-136)||(7546464-7546500)
chr6 (101-145)||(16510327-16510371)
[»] scaffold0620 (2 HSPs)
scaffold0620 (67-152)||(3807-3892)
scaffold0620 (87-133)||(8126-8172)
[»] scaffold0036 (4 HSPs)
scaffold0036 (1-148)||(64317-64462)
scaffold0036 (1-148)||(69458-69603)
scaffold0036 (185-294)||(64151-64258)
scaffold0036 (185-294)||(69293-69400)
[»] chr2 (31 HSPs)
chr2 (1-165)||(37830918-37831078)
chr2 (67-139)||(4162052-4162123)
chr2 (101-158)||(39338878-39338935)
chr2 (97-145)||(4471930-4471978)
chr2 (72-152)||(8520384-8520464)
chr2 (87-143)||(14405195-14405251)
chr2 (101-145)||(22885159-22885203)
chr2 (72-142)||(23650367-23650437)
chr2 (101-142)||(10524108-10524149)
chr2 (69-146)||(34143078-34143155)
chr2 (101-145)||(1269494-1269538)
chr2 (87-143)||(7874288-7874344)
chr2 (101-145)||(16959993-16960037)
chr2 (101-145)||(33788658-33788702)
chr2 (87-142)||(36276200-36276255)
chr2 (101-143)||(14106552-14106594)
chr2 (102-143)||(2062901-2062942)
chr2 (68-169)||(9560790-9560891)
chr2 (69-106)||(19948010-19948047)
chr2 (101-141)||(15126440-15126480)
chr2 (68-136)||(23665439-23665507)
chr2 (101-145)||(31902440-31902484)
chr2 (101-144)||(27739986-27740029)
chr2 (68-139)||(44888351-44888422)
chr2 (87-145)||(18681062-18681120)
chr2 (68-158)||(42048229-42048319)
chr2 (101-142)||(387184-387225)
chr2 (101-158)||(13337285-13337342)
chr2 (101-145)||(10173604-10173648)
chr2 (101-145)||(25504935-25504979)
chr2 (187-255)||(37831108-37831176)
[»] chr4 (29 HSPs)
chr4 (69-150)||(26474816-26474896)
chr4 (67-157)||(2165485-2165574)
chr4 (80-158)||(39041287-39041365)
chr4 (20-152)||(32057042-32057175)
chr4 (100-164)||(2792281-2792345)
chr4 (72-144)||(36962642-36962714)
chr4 (87-145)||(21387230-21387288)
chr4 (87-145)||(46698811-46698869)
chr4 (99-152)||(40813800-40813853)
chr4 (81-141)||(6599975-6600035)
chr4 (101-145)||(25753183-25753227)
chr4 (88-143)||(16501729-16501784)
chr4 (73-136)||(31050697-31050760)
chr4 (87-145)||(35800486-35800544)
chr4 (68-134)||(37707392-37707458)
chr4 (104-142)||(39421042-39421080)
chr4 (101-142)||(38637261-38637302)
chr4 (101-145)||(4305736-4305780)
chr4 (88-148)||(12470049-12470109)
chr4 (88-148)||(12470618-12470678)
chr4 (101-145)||(22811186-22811230)
chr4 (68-136)||(53756735-53756802)
chr4 (101-145)||(53823447-53823491)
chr4 (237-299)||(32057267-32057329)
chr4 (101-158)||(8255038-8255095)
chr4 (101-158)||(8268456-8268513)
chr4 (101-145)||(2061764-2061808)
chr4 (101-145)||(19311369-19311412)
chr4 (101-145)||(38929838-38929882)
[»] scaffold0236 (1 HSPs)
scaffold0236 (120-300)||(10265-10452)
[»] chr7 (38 HSPs)
chr7 (188-303)||(28006697-28006812)
chr7 (46-152)||(46262138-46262244)
chr7 (95-144)||(38485561-38485610)
chr7 (87-143)||(6584906-6584962)
chr7 (101-145)||(13311850-13311894)
chr7 (103-158)||(10244195-10244250)
chr7 (68-139)||(27993568-27993639)
chr7 (101-143)||(34389973-34390015)
chr7 (101-142)||(9349760-9349801)
chr7 (101-158)||(38306272-38306329)
chr7 (101-145)||(6716762-6716806)
chr7 (105-145)||(12480901-12480941)
chr7 (101-144)||(11379154-11379197)
chr7 (70-152)||(6718749-6718831)
chr7 (103-145)||(8745166-8745208)
chr7 (87-145)||(46133304-46133362)
chr7 (101-143)||(47325913-47325955)
chr7 (82-135)||(25153212-25153265)
chr7 (101-142)||(42533281-42533322)
chr7 (105-145)||(3478367-3478407)
chr7 (101-145)||(33435120-33435164)
chr7 (99-139)||(35206725-35206765)
chr7 (71-142)||(23777664-23777735)
chr7 (68-138)||(2570138-2570208)
chr7 (105-143)||(3419684-3419722)
chr7 (102-136)||(17802851-17802885)
chr7 (101-143)||(41089776-41089818)
chr7 (105-158)||(3867131-3867184)
chr7 (101-142)||(5860317-5860358)
chr7 (101-142)||(23983206-23983247)
chr7 (105-142)||(24324827-24324864)
chr7 (87-140)||(26386206-26386259)
chr7 (101-146)||(48058679-48058724)
chr7 (101-145)||(1320805-1320849)
chr7 (72-136)||(2613902-2613966)
chr7 (101-145)||(9428131-9428175)
chr7 (68-148)||(23144133-23144213)
chr7 (105-145)||(37795004-37795044)
[»] chr5 (18 HSPs)
chr5 (26-152)||(12046191-12046318)
chr5 (101-158)||(34378109-34378166)
chr5 (70-152)||(28765621-28765703)
chr5 (101-142)||(698372-698413)
chr5 (101-142)||(13954263-13954304)
chr5 (101-145)||(7195265-7195309)
chr5 (101-145)||(7392057-7392101)
chr5 (102-145)||(39184213-39184256)
chr5 (95-145)||(31721682-31721732)
chr5 (101-145)||(22675350-22675394)
chr5 (101-145)||(25992018-25992062)
chr5 (101-145)||(33258908-33258952)
chr5 (68-133)||(25341676-25341741)
chr5 (101-145)||(8730928-8730972)
chr5 (105-145)||(21402863-21402903)
chr5 (101-145)||(23426355-23426399)
chr5 (101-145)||(27713080-27713124)
chr5 (101-145)||(29087492-29087536)
[»] scaffold0572 (1 HSPs)
scaffold0572 (68-172)||(6256-6358)
[»] scaffold0127 (1 HSPs)
scaffold0127 (68-172)||(31234-31336)
[»] chr8 (27 HSPs)
chr8 (87-145)||(10552265-10552323)
chr8 (101-158)||(24995408-24995465)
chr8 (101-158)||(31207375-31207432)
chr8 (87-145)||(30236154-30236212)
chr8 (87-145)||(35062454-35062512)
chr8 (68-144)||(12883568-12883643)
chr8 (87-143)||(15821407-15821463)
chr8 (101-145)||(15906697-15906741)
chr8 (101-143)||(32066323-32066365)
chr8 (101-158)||(9519510-9519567)
chr8 (101-158)||(34389018-34389075)
chr8 (101-158)||(37986871-37986928)
chr8 (69-149)||(16055222-16055302)
chr8 (110-158)||(16457474-16457522)
chr8 (105-145)||(17657028-17657068)
chr8 (99-139)||(33967335-33967375)
chr8 (101-145)||(36630848-36630892)
chr8 (101-145)||(41893426-41893470)
chr8 (87-142)||(32945732-32945787)
chr8 (101-139)||(40531243-40531281)
chr8 (87-136)||(544385-544434)
chr8 (87-140)||(5221869-5221922)
chr8 (67-148)||(12789532-12789613)
chr8 (68-148)||(46249-46329)
chr8 (105-145)||(10248579-10248619)
chr8 (101-145)||(12898300-12898344)
chr8 (72-112)||(17819863-17819903)
[»] scaffold1613 (1 HSPs)
scaffold1613 (101-145)||(1043-1087)
[»] scaffold0200 (1 HSPs)
scaffold0200 (101-145)||(19394-19438)
[»] scaffold0119 (1 HSPs)
scaffold0119 (101-145)||(42164-42208)
[»] scaffold0068 (1 HSPs)
scaffold0068 (101-142)||(35800-35841)
[»] scaffold0050 (1 HSPs)
scaffold0050 (101-145)||(36718-36762)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 95 - 305
Target Start/End: Original strand, 30655565 - 30655776
Alignment:
Q  95 ttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgaccc-aagtgtttttggcttgttttctccagcagcctgaggatt 193  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30655565 ttctggagtctagtgggccgatcgcttttgattcgagatcgggagtcagtttcttgaccccaagtgtttttggcttgttttctccagcagcctgaggatt 30655664  T
Q  194 gattggtggtggaatcttaattagttcgggtattttgctcagctgtggtgatgagaaggtgatgtgcggtttgtggtgatgagaaggtgaagtgttgttg 293  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  30655665 gattggtggtggaatcttaattagtttgagtattttgctcagctgtggtgatgagaaggtgatgtgcggtttgtggtgatgagaagatgaggtgttgttg 30655764  T
Q  294 tcaggggtttcc 305  Q
    ||||||||||||    
T  30655765 tcaggggtttcc 30655776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 15841082 - 15840932
Alignment:
Q  1 gagatcgcaagttagcttctagttacaagtttttgggatagttaaggtgtcttctccgaagtttcaagagttgaggggcgccttagtgatttgtttctgg 100  Q
    ||||||| |||||||| ||||||| |||||||||| ||| |||||||||| |||||||||  | |  ||| |||||||  |||||| ||||||||||| |    
T  15841082 gagatcggaagttagcgtctagtttcaagtttttgtgatggttaaggtgttttctccgaatgtccgggagatgaggggttccttagggatttgtttctag 15840983  T
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttga 151  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  15840982 agtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttga 15840932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 32876726 - 32876644
Alignment:
Q  71 ttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacc 153  Q
    |||||||| ||||||||||||||||| |||||| ||||||| |||   |||||||||||||||||||||||| ||||||||||    
T  32876726 ttgaggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttcttgacc 32876644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 41403101 - 41403017
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    ||||||||||| | ||||||||||||||||| |||||||||| ||||||| | |||||||||||  ||  |||||||||||||||    
T  41403101 gagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgac 41403017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 31585830 - 31585773
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  31585830 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 31585773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 41920463 - 41920520
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  41920463 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 41920520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 38544808 - 38544764
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  38544808 agtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 38544764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 46814551 - 46814495
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  46814551 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 46814495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 7857650 - 7857705
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  7857650 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 7857705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 36132835 - 36132752
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttga 151  Q
    ||||| ||||| | |||||||| || ||| |||||| ||||||| ||||| ||||||||| |||||||| ||||||||||||||    
T  36132835 gagttaaggggtgtcttagtgaattatttttggagtttggtgggtcgatcgcttttgatttgagatcggaagtcagtttcttga 36132752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 2660817 - 2660704
Alignment:
Q  187 gaggattgattggtggtggaatcttaattagttcgggtattttgctcagctgtggtgatgagaaggtgatgtgcggtttgtggtgatgagaaggtgaagt 286  Q
    |||||||||||| ||||| ||| | ||  |||  ||| |||| ||||||||  |||||||||||||||| |||  |||| ||||||||||||||||| ||    
T  2660817 gaggattgattgatggtgaaatatgaacgagtgtgggaatttggctcagctcaggtgatgagaaggtgaggtgatgtttctggtgatgagaaggtgatgt 2660718  T
Q  287 gttgttgtcagggg 300  Q
    | |||||| |||||    
T  2660717 gctgttgttagggg 2660704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 5459172 - 5459213
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  5459172 agtctggtgggccgatcacttttgattcgagatcgggagtca 5459213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 19598647 - 19598704
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||  ||||| |||||    
T  19598647 agtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagt 19598704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 17033597 - 17033641
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||    
T  17033597 agtctggtgggccgatcacttttgaatcgagatcgggagtcagtt 17033641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 24658926 - 24658982
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||| ||||  ||||||||||||| ||| |||||||||||||||||||||||||    
T  24658926 tgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcag 24658982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 46692889 - 46692845
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    
T  46692889 agtctggtgggccgatcacttttgattcgagatcgggagttagtt 46692845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 4651791 - 4651834
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagt 144  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||    
T  4651791 agtctggggggccgatcacttttgattcgagatcgggagtcagt 4651834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 13987599 - 13987670
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    ||||||||||| |||||  |||||||| || ||| ||||||||||| ||| |||||| ||||||||||||||    
T  13987599 gagttgaggggtgccttgatgatttgtgtcgggaatctggtgggccaatcgcttttgcttcgagatcgggag 13987670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 38564880 - 38564950
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    ||||||||||| |||||  |||||||| |  ||||||| ||||||||||| |||||||||||||||||||||    
T  38564880 gagttgaggggtgccttt-tgatttgtgttaggagtctcgtgggccgatcgcttttgattcgagatcgggag 38564950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 33034750 - 33034668
Alignment:
Q  67 agagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttctt 149  Q
    |||||| | ||| ||||||| |||||  || |||||||||||||| ||||| ||| |||||||||||||  ||||||||||||    
T  33034750 agagtttaagggtgccttagagattttcttatggagtctggtgggtcgatcacttctgattcgagatcgaaagtcagtttctt 33034668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 5389483 - 5389434
Alignment:
Q  109 gggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  5389483 gggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 5389434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 30685974 - 30685917
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||  ||||| |||||    
T  30685974 agtcttgtgggccgatcacttttgatttgagatcgggagtcagttctttgactcaagt 30685917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 9081604 - 9081532
Alignment:
Q  72 tgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagt 144  Q
    |||||||  ||||| ||||||| ||||||||||  ||||  ||||| ||||||||||||||||||||| ||||    
T  9081604 tgaggggtaccttactgatttgcttctggagtcacgtggatcgatcacttttgattcgagatcgggagccagt 9081532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 9313359 - 9313315
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||    
T  9313359 agtctagtgggctgatcacttttgattcgagatcgggagtcagtt 9313315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 27031924 - 27031868
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||| ||||  ||||| ||||||||||| ||||||||||||||||| |||||||    
T  27031924 tgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcag 27031868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 27102210 - 27102246
Alignment:
Q  109 gggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||| |||||||||||||||||||||||||||    
T  27102210 gggccgatcacttttgattcgagatcgggagtcagtt 27102246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 8133581 - 8133620
Alignment:
Q  264 ttgtggtgatgagaaggtgaagtgttgttgtcaggggttt 303  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  8133581 ttgtggtgatgagaaggtgaggtgttgttgttaggggttt 8133620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 6583315 - 6583245
Alignment:
Q  72 tgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||| |||||  ||||||| | ||  |||||||||| |||||| |||||||||||||||||| |||||    
T  6583315 tgaggggtgcctttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtca 6583245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 42374175 - 42374217
Alignment:
Q  102 gtctggtgggccgatctcttttgattcgagatcgggagtcagt 144  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||    
T  42374175 gtctggtggaccgatcgcttttgatttgagatcgggagtcagt 42374217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 22200000 - 22200060
Alignment:
Q  82 cttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    |||| |||||||  ||||||||||| ||| |||||| |||||||||| |||||| ||||||    
T  22200000 cttactgatttgactctggagtctgatggaccgatcacttttgattcaagatcgagagtca 22200060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 24449996 - 24449956
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  24449996 tggtgggccgatcacttttgatttgagatcggaagtcagtt 24449956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 24684548 - 24684504
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| ||||| ||||||||||||  |||||||    
T  24684548 agtctggtgggccgatcacttttaattcgagatcggatgtcagtt 24684504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 33019553 - 33019621
Alignment:
Q  80 gccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    ||||||||||||||||| |||| |||||| ||| ||||  || | ||||||||||  ||||||||||||    
T  33019553 gccttagtgatttgtttatggattctggtaggctgatcgtttgttattcgagatcaagagtcagtttct 33019621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 34774883 - 34774926
Alignment:
Q  102 gtctggtgggccgatctcttttgattcgagatcgggagtcagttt 146  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||    
T  34774883 gtctggtggaccgatcacttttgat-cgagatcgggagtcagttt 34774926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 46603403 - 46603447
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||||||  || ||||||||||||||||| |||||||||    
T  46603403 agtctggtgggccattcgcttttgattcgagatcgagagtcagtt 46603447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 24992077 - 24991946
Alignment:
Q  9 aagttagcttctagttacaagtttttgggatagttaaggtgtcttctccgaagtttcaagagttgaggggcgccttagtgatttgtttctggagtctggt 108  Q
    |||||||| ||||||| |||||| ||||||| ||||||||||||||||||||| | || |||||||| ||  |||||||||||||||| |||| | ||||    
T  24992077 aagttagcgtctagttccaagttattgggatggttaaggtgtcttctccgaaggtccaggagttgagaggtaccttagtgatttgtttttggattatggt 24991978  T
Q  109 gggccgatctcttttgattcgagatcgggagt 140  Q
    ||||||| | ||||||||||||||| ||||||    
T  24991977 gggccgaccgcttttgattcgagatagggagt 24991946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 30127181 - 30127347
Alignment:
Q  9 aagttagcttctagttacaagtttttgggatagttaaggtgtcttctccgaagtttcaagagttgaggggcgccttagtgatttgtttctggagtctggt 108  Q
    |||||||  ||||||| |||||||||||| | |||||||||||| ||     | || | || |||||||| ||  || ||||||||||| ||||||||||    
T  30127181 aagttagtgtctagtttcaagtttttgggttggttaaggtgtctgctatagtggtttaggaattgaggggtgctctattgatttgtttcgggagtctggt 30127280  T
Q  109 gggccgatctcttttgattcgagatcgggagtcagtt-tcttgacccaagtgtttttggcttgtttt 174  Q
    | ||||||| ||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||    
T  30127281 gagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagttttttaggcttgtttt 30127347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 24099424 - 24099352
Alignment:
Q  74 aggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagttt 146  Q
    ||||| |||||| |||||||||| | |||||||||||||||||| |||||||||||| ||||||| |||||||    
T  24099424 aggggtgccttaatgatttgtttatagagtctggtgggccgatcacttttgattcgatatcgggaatcagttt 24099352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 17550968 - 17551025
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  17550968 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 17551025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 19176513 - 19176570
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  19176513 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 19176570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 34475836 - 34475783
Alignment:
Q  89 atttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  34475836 atttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtca 34475783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 2782172 - 2782088
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    ||||||||||| |||||| |||||||| ||  |||||||||||| ||||| |||||||||  |||||||||| |||||| |||||    
T  2782172 gagttgaggggtgccttaatgatttgtgtcgagagtctggtgggacgatcacttttgattttagatcgggagccagttttttgac 2782088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 19295942 - 19295863
Alignment:
Q  94 tttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggcttgtttt 174  Q
    ||||| |||||||||||||| ||| |||||||||||| ||||| ||| ||||||||||| ||||| |||| ||||||||||    
T  19295942 tttcttgagtctggtgggcctatcacttttgattcgatatcggaagttagtttcttgactcaagt-ttttgggcttgtttt 19295863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 31424218 - 31424290
Alignment:
Q  72 tgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagt 144  Q
    ||||||| |||||| ||||||||||   ||||||||| ||||| || ||||||||||||||||||||||||||    
T  31424218 tgaggggtgccttactgatttgttttcagagtctggtaggccggtcgcttttgattcgagatcgggagtcagt 31424290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 51065948 - 51065886
Alignment:
Q  65 caagagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgatt 127  Q
    |||||||||||||||  |||||||||||||||  |||||||||||| |||||| |||||||||    
T  51065948 caagagttgaggggcttcttagtgatttgttttgggagtctggtggaccgatcgcttttgatt 51065886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 43012386 - 43012443
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    |||||||||| |||||| |||||||||||||||||||||||||||  ||||| |||||    
T  43012386 agtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 43012443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 5556581 - 5556625
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||    
T  5556581 agtctggtggggcgatcgcttttgattcgagatcgggagtcagtt 5556625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 14755335 - 14755291
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||    
T  14755335 agtctggtgggccgatcacttttgattcaagatcgggagtcagtt 14755291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 14879446 - 14879486
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtc 141  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  14879446 agtctggtgggccgatcacttttgattcgagatcgggagtc 14879486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 24712620 - 24712684
Alignment:
Q  72 tgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgg 136  Q
    ||||||| |||||| ||||||||||||||||| |||||||||| ||  |||| ||||||||||||    
T  24712620 tgaggggtgccttactgatttgtttctggagtatggtgggccggtcattttttattcgagatcgg 24712684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 47945717 - 47945761
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||| |||||||||||| |||||||||||||||||||||||||||    
T  47945717 agtccggtgggccgatcacttttgattcgagatcgggagtcagtt 47945761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 16285044 - 16285115
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    ||||||||||| |||||  ||| | || |||||||||| ||||||||||| ||||||||||||| |||||||    
T  16285044 gagttgaggggtgcctttttgactagtgtctggagtcttgtgggccgatcgcttttgattcgaggtcgggag 16285115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 20710778 - 20710740
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20710778 agtctggtgggccgatcacttttgattcgagatcgggag 20710740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 3968653 - 3968569
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    ||||||||||| |||||  |||||||| || |||||||||||| || ||| |||||| ||||||||| ||||  ||||| |||||    
T  3968653 gagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctagttttttgac 3968569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 4000152 - 4000236
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    ||||||||||| |||||  |||||||| || |||||||||||| || ||| |||||| ||||||||| ||||  ||||| |||||    
T  4000152 gagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctagttttttgac 4000236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 9584123 - 9584079
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||    
T  9584123 agtctggtggatcgatcacttttgattcgagatcgggagtcagtt 9584079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 17324228 - 17324180
Alignment:
Q  100 gagtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    |||||| ||||||||||||||||||||||||| |||||||  |||||||    
T  17324228 gagtcttgtgggccgatctcttttgattcgaggtcgggagcaagtttct 17324180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 33144019 - 33143975
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||    
T  33144019 agtctggtggatcgatcacttttgattcgagatcgggagtcagtt 33143975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 37123397 - 37123437
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  37123397 tggtgggccgatcacttttgattcgagattgggagtcagtt 37123437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 39021342 - 39021302
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagtt 39021302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 40023642 - 40023602
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtc 141  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  40023642 agtctggtggaccgatcacttttgattcgagatcgggagtc 40023602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 294
Target Start/End: Complemental strand, 24099182 - 24099152
Alignment:
Q  264 ttgtggtgatgagaaggtgaagtgttgttgt 294  Q
    |||||||||||||||||||||||||||||||    
T  24099182 ttgtggtgatgagaaggtgaagtgttgttgt 24099152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 45398807 - 45398849
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    |||||||||| |||||| ||||||||||||||||| |||||||    
T  45398807 agtctggtggaccgatcacttttgattcgagatcgagagtcag 45398849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 823498 - 823461
Alignment:
Q  108 tgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  823498 tgggccgatcacttttgattcgagatcgagagtcagtt 823461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 20611801 - 20611838
Alignment:
Q  108 tgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  20611801 tgggccgatcatttttgattcgagatcgggagtcagtt 20611838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 23328434 - 23328381
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagt 140  Q
    ||||||| ||||  ||| |||||| |||||| ||||||||||||||||||||||    
T  23328434 tgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagt 23328381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 19133835 - 19133744
Alignment:
Q  80 gccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggcttgtt 172  Q
    |||||||||||||||||||  | | |||||||  |||| ||||||||||||| | || ||||||||| ||| | ||| | |||||||||||||    
T  19133835 gccttagtgatttgtttctcaaatttggtgggtagatcacttttgattcgagtttggaagtcagtttattggctcaaat-tttttggcttgtt 19133744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 28970036 - 28970092
Alignment:
Q  84 tagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagt 140  Q
    ||||||||||||  | |||| |||||||||||||| ||||| |||||||| ||||||    
T  28970036 tagtgatttgttaatagagtatggtgggccgatcttttttgcttcgagattgggagt 28970092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 34105390 - 34105475
Alignment:
Q  67 agagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    |||||||| ||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34105390 agagttgaagggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtttcttgac 34105475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 20970508 - 20970406
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggc 167  Q
    ||||||||||| | ||||||||||||||||| |||||||||| ||||||| | |||||||||||  ||  |||||||||||||||  ||  |||||||||    
T  20970508 gagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaa--gtttttggc 20970411  T
Q  168 ttgtt 172  Q
    |||||    
T  20970410 ttgtt 20970406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 32935423 - 32935365
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  32935423 tgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 32935365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 26216089 - 26216045
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  26216089 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 26216045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 26534803 - 26534745
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| | ||| ||||||||||||||||| ||||||||||||||| |||||||||||    
T  26534803 tgatttggtcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagtt 26534745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 9239282 - 9239221
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    |||||||||| ||||||  ||||||||||||  ||||| |||||||||||||||||||||||    
T  9239282 tgatttgtttttggagtacggtgggccgatcgtttttgcttcgagatcgggagtcagtttct 9239221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 9224052 - 9224096
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||||| |||| |||||||||||||||||||||||||||    
T  9224052 agtctggtgggctgatcgcttttgattcgagatcgggagtcagtt 9224096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 34090373 - 34090421
Alignment:
Q  100 gagtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||    
T  34090373 gagtctggtgggtcgatcaattttgattcgagatcgggagtcagtttct 34090421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 3117508 - 3117561
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||| |||||||||| ||||||||||||||||  ||||| |||||    
T  3117508 tggtgggccgatcacttttgattcaagatcgggagtcagttctttgactcaagt 3117561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 20499916 - 20499965
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgg 136  Q
    ||||||| ||||||||| |||||| |||||| ||||||||||||||||||    
T  20499916 tgatttgattctggagtatggtggaccgatcgcttttgattcgagatcgg 20499965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 21266127 - 21266168
Alignment:
Q  104 ctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  21266127 ctggtgggccgatcgcttttgattcgagatcgggagttagtt 21266168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 33968697 - 33968639
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| || || ||||| |||||  |||| |||||||||||||||||||||||||||    
T  33968697 tgatttggttatgtagtctagtgggtagatcgcttttgattcgagatcgggagtcagtt 33968639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 34092792 - 34092838
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagat 133  Q
    |||||||| | |||||||||||| ||||||| |||||||||||||||    
T  34092792 tgatttgtctttggagtctggtgagccgatcacttttgattcgagat 34092838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 20701870 - 20701829
Alignment:
Q  104 ctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||| ||||||| |||||||||||||||||||||| ||||    
T  20701870 ctggtgtgccgatcacttttgattcgagatcgggagttagtt 20701829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 7546500 - 7546464
Alignment:
Q  100 gagtctggtgggccgatctcttttgattcgagatcgg 136  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  7546500 gagtctggtggaccgatcacttttgattcgagatcgg 7546464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 16510371 - 16510327
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||| ||||||||||| ||||||||||||||| | |||||||||    
T  16510371 agtctagtgggccgatcacttttgattcgagattgagagtcagtt 16510327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 3807 - 3892
Alignment:
Q  67 agagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    ||||||||  || |||| |||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  3807 agagttgaacggtgcctcagtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtcagtttcttgac 3892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 8126 - 8172
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagat 133  Q
    |||||||| | |||||||||||| ||||||| |||||||||||||||    
T  8126 tgatttgtctttggagtctggtgagccgatcacttttgattcgagat 8172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 64462 - 64317
Alignment:
Q  1 gagatcgcaagttagcttctagttacaagtttttgggatagttaaggtgtcttctccgaagtttcaagagttgaggggcgccttagtgatttgtttctgg 100  Q
    ||||||| |||||  | ||||||| || |||||| |||| ||||||||||||| ||| ||||| || ||||||| ||| |||| ||||||||||||||||    
T  64462 gagatcggaagttgacgtctagtttcatgttttttggatggttaaggtgtcttttcc-aagttccaggagttgaagggtgcct-agtgatttgtttctgg 64365  T
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    |||||| || || |||| ||||||||| ||||||| || |||||||||    
T  64364 agtctgatgtgctgatcacttttgatttgagatcgagattcagtttct 64317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 69603 - 69458
Alignment:
Q  1 gagatcgcaagttagcttctagttacaagtttttgggatagttaaggtgtcttctccgaagtttcaagagttgaggggcgccttagtgatttgtttctgg 100  Q
    ||||||| |||||  | ||||||| || |||||| |||| ||||||||||||| ||| ||||| || ||||||| ||| |||| ||||||||||||||||    
T  69603 gagatcggaagttgacgtctagtttcatgttttttggatggttaaggtgtcttttcc-aagttccaggagttgaagggtgcct-agtgatttgtttctgg 69506  T
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    |||||| || || |||| ||||||||| ||||||| || |||||||||    
T  69505 agtctgatgtgctgatcacttttgatttgagatcgagattcagtttct 69458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 64258 - 64151
Alignment:
Q  185 ctgaggattgattggtggtggaatcttaattagttcgggtattttgctcagctgtggtgatgagaaggtgatgtg-cggtttgtggtgatgagaaggtga 283  Q
    |||||||||||| ||||||||||||| |||||||||||  |||  |||  | ||||||||||   |||||| ||| | ||||||||||||||||||| ||    
T  64258 ctgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatg---aggtgaggtgtctgtttgtggtgatgagaagggga 64162  T
Q  284 agtgttgttgt 294  Q
     ||||||||||    
T  64161 ggtgttgttgt 64151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 69400 - 69293
Alignment:
Q  185 ctgaggattgattggtggtggaatcttaattagttcgggtattttgctcagctgtggtgatgagaaggtgatgtg-cggtttgtggtgatgagaaggtga 283  Q
    |||||||||||| ||||||||||||| |||||||||||  |||  |||  | ||||||||||   |||||| ||| | ||||||||||||||||||| ||    
T  69400 ctgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatg---aggtgaggtgtctgtttgtggtgatgagaagggga 69304  T
Q  284 agtgttgttgt 294  Q
     ||||||||||    
T  69303 ggtgttgttgt 69293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 37830918 - 37831078
Alignment:
Q  1 gagatcgcaagttagcttctagttacaagtttttgggatagttaaggtgtcttctccgaagtttcaagagttgaggggcgccttagtgatttgtttctgg 100  Q
    ||||||| |||||||  ||||||| |||||| | ||||| ||||||||||||| ||||||  |    |||||||||| |||| |||||||||||||||      
T  37830918 gagatcggaagttagtgtctagtttcaagttat-gggatggttaaggtgtcttatccgaacgtg---gagttgagggacgccctagtgatttgtttctaa 37831013  T
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagtgtttttg 165  Q
    |||| |||  ||||||| |||||||||||| ||| | ||||||||||||||| ||||| ||||||    
T  37831014 agtcaggtaagccgatcacttttgattcgaaatctgaagtcagtttcttgactcaagtttttttg 37831078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 4162123 - 4162052
Alignment:
Q  67 agagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    |||||||||||| |||| |||||||||| |  ||||||||||||||||||| |||||||||||||||||||||    
T  4162123 agagttgaggggtgcct-agtgatttgtgttgggagtctggtgggccgatcacttttgattcgagatcgggag 4162052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 39338935 - 39338878
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  39338935 agtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgactcaagt 39338878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 4471930 - 4471978
Alignment:
Q  97 ctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||    
T  4471930 ctggagtctggtgggccgatcgcctttgattcgagatcgggagtcagtt 4471978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 8520384 - 8520464
Alignment:
Q  72 tgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    ||||||| ||||||||||||||||||| ||||||| ||| || ||| |||||||||||||||| | |||| | ||||||||    
T  8520384 tgaggggtgccttagtgatttgtttctagagtctgatggaccaatcacttttgattcgagatcagaagtctgcttcttgac 8520464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 14405195 - 14405251
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  14405195 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 14405251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 22885203 - 22885159
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  22885203 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 22885159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 23650367 - 23650437
Alignment:
Q  72 tgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    |||||||  ||||| | ||||| |||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  23650367 tgaggggtaccttacttatttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagtca 23650437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 10524108 - 10524149
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10524108 agtctggtgggccgatcacttttgattcgagatcgggagtca 10524149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 34143155 - 34143078
Alignment:
Q  69 agttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagttt 146  Q
    |||||||||| |  |||||||||| ||| |||||||||||| ||||||| |||||| ||| ||||||| |||||||||    
T  34143155 agttgaggggtgttttagtgatttttttttggagtctggtgagccgatcacttttgcttctagatcggaagtcagttt 34143078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 1269494 - 1269538
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  1269494 agtctggtgggccgatcacttttgattcgagatcggaagtcagtt 1269538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 7874288 - 7874344
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||| ||||  ||||||||||| ||||| |||||||||||||||||||||||||    
T  7874288 tgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtcag 7874344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 16959993 - 16960037
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||    
T  16959993 agtctggtgggccgatcgcttttgattcgagatcgagagtcagtt 16960037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 33788702 - 33788658
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||    
T  33788702 agtctggtgggccgatcgcttttgattcgagattgggagtcagtt 33788658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 36276255 - 36276200
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||| || ||||||||||||||| | || ||||||||||||||||||||||||    
T  36276255 tgatttggttatggagtctggtgggctgttcgcttttgattcgagatcgggagtca 36276200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 14106594 - 14106552
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  14106594 agtctggtgggccgatcacttttgattcaagatcgggagtcag 14106552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 2062901 - 2062942
Alignment:
Q  102 gtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcag 2062942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 9560891 - 9560790
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggc 167  Q
    ||||||||||| |||||  |||||||| ||   ||| |||||| |||||| |||||||||||||||||||||  ||||| ||||| || ||  |||||||    
T  9560891 gagttgaggggtgccttgatgatttgtgtcgaaagtttggtggaccgatcacttttgattcgagatcgggagctagttttttgactcaggttcttttggc 9560792  T
Q  168 tt 169  Q
    ||    
T  9560791 tt 9560790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 19948047 - 19948010
Alignment:
Q  69 agttgaggggcgccttagtgatttgtttctggagtctg 106  Q
    |||||||||| |||||||||||||||||||||||||||    
T  19948047 agttgaggggtgccttagtgatttgtttctggagtctg 19948010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 15126480 - 15126440
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtc 141  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  15126480 agtctggtgggccgatcatttttgattcgagatcgggagtc 15126440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 23665507 - 23665439
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgg 136  Q
    ||||||||||| ||| |  | |||||| || ||||||| ||||||||||| ||||||||||||||||||    
T  23665507 gagttgaggggtgccatttttatttgtatcgggagtctagtgggccgatcacttttgattcgagatcgg 23665439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 31902484 - 31902440
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||    
T  31902484 agtctggtgggccaatcgcttttaattcgagatcgggagtcagtt 31902440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 27739986 - 27740029
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagt 144  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||    
T  27739986 agtctggtgggccgatcgcttttgattcaagatcgagagtcagt 27740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 44888422 - 44888351
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    ||||||||||| |||||| |||||| | || ||||| |||||||||||||  |||| ||||||||| |||||    
T  44888422 gagttgaggggtgccttattgatttatgtcgggagtttggtgggccgatcattttttattcgagattgggag 44888351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 18681062 - 18681120
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| || || ||| ||||||||||||  | |||||||||||||||||||||||||    
T  18681062 tgatttggttatgaagtatggtgggccgattgcatttgattcgagatcgggagtcagtt 18681120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 42048319 - 42048229
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    |||||||| || |||||  |||||| | || |||||| | ||||| |||| |||||||||||||| |||||| |||||| ||||| |||||    
T  42048319 gagttgagaggtgccttgttgatttctgtcgggagtccgatgggctgatcacttttgattcgagaccgggagccagttttttgactcaagt 42048229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 387184 - 387225
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    |||||||||||| |||| ||||||||| ||||||||||||||    
T  387184 agtctggtgggctgatcacttttgatttgagatcgggagtca 387225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 13337285 - 13337342
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    |||||| |||||||||| |||||||||||| ||||| ||||||||  ||||| |||||    
T  13337285 agtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagt 13337342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 10173648 - 10173604
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  10173648 agtctagtgggccgatcacttttgattcgagatcggaagtaagtt 10173604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 25504979 - 25504935
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||| || ||| ||||| |||||||||||||||||||||    
T  25504979 agtctggtggacctatcgcttttaattcgagatcgggagtcagtt 25504935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 37831108 - 37831176
Alignment:
Q  187 gaggattgattggtggtggaatcttaattagttcgggtattttgctcagctgtggtgatgagaaggtga 255  Q
    |||||||||||||||||||||||| ||| |||   |  |||| |||||| |||||| ||||||||||||    
T  37831108 gaggattgattggtggtggaatctgaatgagtgttgaaatttggctcagttgtggttatgagaaggtga 37831176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 26474816 - 26474896
Alignment:
Q  69 agttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttg 150  Q
    |||||||||||| || |||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||| |||||||||    
T  26474816 agttgaggggcgtct-agtgatttgtttttggagtttggtgggccgatcacttttgattcgagatcgagagttagtttcttg 26474896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 2165485 - 2165574
Alignment:
Q  67 agagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaag 157  Q
    ||||||||| |  ||||| ||||||||||||| |||| |||||| |||||| ||||||||| |||||||||||||||||||||||| ||||    
T  2165485 agagttgagtgatgccttggtgatttgtttctagagtttggtgg-ccgatcgcttttgatttgagatcgggagtcagtttcttgactcaag 2165574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 39041365 - 39041287
Alignment:
Q  80 gccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    |||||| ||||||||||   |||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||    
T  39041365 gccttaatgatttgtttacagagtctggtgggccgatcacttttgattcgagatcaggagtcagtttctagactcaagt 39041287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 32057042 - 32057175
Alignment:
Q  20 tagttacaagtttttgggatagttaaggtgtcttctccgaagtttcaag-agttgaggggcgccttagtgatttgtttctggagtctggtgggccgatct 118  Q
    ||||| ||| |||||||||| ||||||||||||||| ||||| | |  | |||| ||||  |||||| |||||||||| || ||| | || || |||||     
T  32057042 tagtttcaattttttgggatggttaaggtgtcttcttcgaaggtcccgggagttaagggttgccttaatgatttgtttatgaagtttagttggacgatca 32057141  T
Q  119 cttttgattcgagatcgggagtcagtttcttgac 152  Q
    ||||||||| |||||||| |||||||||||||||    
T  32057142 cttttgatttgagatcggaagtcagtttcttgac 32057175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 2792345 - 2792281
Alignment:
Q  100 gagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagtgttttt 164  Q
    |||||| || |||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  2792345 gagtctagtaggccgatcacttttgattcgagatcggaagtcagtttcttgactcaagttttttt 2792281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 36962714 - 36962642
Alignment:
Q  72 tgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagt 144  Q
    |||||||  ||||| ||||||| || |||||||||||||||||||  |||||||||||||||| |||||||||    
T  36962714 tgaggggtaccttactgatttggttttggagtctggtgggccgattacttttgattcgagatcaggagtcagt 36962642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 21387288 - 21387230
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| | |||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  21387288 tgatttggtgctggagtctggtggaccgatcacttttgattcgagatcggaagtcagtt 21387230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 46698869 - 46698811
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| | ||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  46698869 tgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagtt 46698811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 40813853 - 40813800
Alignment:
Q  99 ggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    ||||||||||||||||||| ||||||||||||||||||||| || ||| |||||    
T  40813853 ggagtctggtgggccgatcacttttgattcgagatcgggagccaattttttgac 40813800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 6600035 - 6599975
Alignment:
Q  81 ccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtc 141  Q
    ||||| |||||||  ||| |||||||||||||||||| ||||||||| |||||||||||||    
T  6600035 ccttactgatttggctctagagtctggtgggccgatcgcttttgattagagatcgggagtc 6599975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 25753183 - 25753227
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||    
T  25753183 agtctggtggggcgatcacttttgattcgagatcgggagtcagtt 25753227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 16501729 - 16501784
Alignment:
Q  88 gatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    |||||| | ||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  16501729 gatttgatcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcag 16501784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 31050760 - 31050697
Alignment:
Q  73 gaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgg 136  Q
    |||||| ||| || ||||||| ||||  ||||||||||||||||| ||||||||||||||||||    
T  31050760 gaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgg 31050697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 35800486 - 35800544
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| ||||| |||||||||  |||||| |||||||||||||||||| ||||||||    
T  35800486 tgatttggttctgaagtctggtgaaccgatcgcttttgattcgagatcggaagtcagtt 35800544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 37707458 - 37707392
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatc 134  Q
    ||||||||||| |||||  || | ||| || ||||||||||||||||||| ||||||||||||||||    
T  37707458 gagttgaggggtgcctttttgctatgtgtcgggagtctggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 39421080 - 39421042
Alignment:
Q  104 ctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  39421080 ctggtgggccgatcacttttgattcgagatcgggagtca 39421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 38637302 - 38637261
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  38637302 agtctggcgggccgatcacttttgattcgagatcgggagtca 38637261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 4305736 - 4305780
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||    
T  4305736 agtctggtggggcgatcacttttgattcgagatcgggagttagtt 4305780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 12470049 - 12470109
Alignment:
Q  88 gatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    ||||||||| |||||||||||| ||| |||  ||||| |||||||| ||||||||||||||    
T  12470049 gatttgtttatggagtctggtgtgccaatcaattttgcttcgagattgggagtcagtttct 12470109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 12470618 - 12470678
Alignment:
Q  88 gatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    ||||||||| |||||||||||| ||| |||  ||||| |||||||| ||||||||||||||    
T  12470618 gatttgtttatggagtctggtgtgccaatcaattttgcttcgagattgggagtcagtttct 12470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 22811230 - 22811186
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||||||||||  |||| |||||||||||||||||||||    
T  22811230 agtctggtgggccgatcattttttattcgagatcgggagtcagtt 22811186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 53756735 - 53756802
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgg 136  Q
    ||||||| ||| |||||| |||||||  || | ||||||||||||||||| ||||||||||||||||||    
T  53756735 gagttgaagggtgccttattgatttgcatc-gaagtctggtgggccgatcacttttgattcgagatcgg 53756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 53823491 - 53823447
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||| || ||| |||||||||||||||||||||||||||    
T  53823491 agtctggtggaccaatcacttttgattcgagatcgggagtcagtt 53823447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 32057267 - 32057329
Alignment:
Q  237 tgtggtgatgagaaggtgatgtgcggtttgtggtgatgagaaggtgaagtgttgttgtcaggg 299  Q
    ||||||||||| ||||||| |||  ||||||||| |||||||||||| || ||||||| ||||    
T  32057267 tgtggtgatgataaggtgaggtgttgtttgtggtaatgagaaggtgatgttttgttgttaggg 32057329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 8255038 - 8255095
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||| ||||||| | ||||||||  ||||| |||||    
T  8255038 agtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagt 8255095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 8268456 - 8268513
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||| ||||||| | ||||||||  ||||| |||||    
T  8268456 agtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagt 8268513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 2061808 - 2061764
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||||| |||| ||||||||||||||| | |||||||||    
T  2061808 agtctggtgggctgatcacttttgattcgagattgagagtcagtt 2061764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 19311412 - 19311369
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  19311412 agtctggtgggtcgatcacttttgattcgaga-cgggagtcagtt 19311369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 38929838 - 38929882
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||| |||||||||| ||||||||||||||||  |||||||||    
T  38929838 agtctgctgggccgatcacttttgattcgagatcaagagtcagtt 38929882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 300
Target Start/End: Complemental strand, 10452 - 10265
Alignment:
Q  120 ttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggcttgtttt--------ctccagcagcctgaggattgattggtggtggaatctt 211  Q
    |||||||||||||||| |||||||||||||||| ||||| | |||||||||||||        ||| | ||  | |||||||||||||||||||||||      
T  10452 ttttgattcgagatcgagagtcagtttcttgactcaagt-tgtttggcttgttttggtgtcttctctaacaaaccgaggattgattggtggtggaatcca 10354  T
Q  212 aattagttcgggtattttgctcagctgtggtgatgagaaggtgatgtgcggtttgtggtgatgagaaggtgaagtgttgttgtcagggg 300  Q
    ||| |||||    |||| |||||| || || |||||||||||||  || ||||| ||||||||||||||||| ||| |||||| |||||    
T  10353 aatgagttcataaatttagctcagttgaggagatgagaaggtgagttgaggtttttggtgatgagaaggtgaggtgctgttgttagggg 10265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 28006697 - 28006812
Alignment:
Q  188 aggattgattggtggtggaatcttaattagttcgggtattttgctcagctgtggtgatgagaaggtgatgtgcggtttgtggtgatgagaaggtgaagtg 287  Q
    ||||||||||||||||||||||  ||| |||  ||| |||| |||||  ||||||||||||||| ||| |||  |||||||||| ||||||||||| ||     
T  28006697 aggattgattggtggtggaatccgaatgagtgtgggaatttggctcaattgtggtgatgagaagttgaagtgttgtttgtggtgttgagaaggtgaggta 28006796  T
Q  288 ttgttgtcaggggttt 303  Q
    ||||||| ||||||||    
T  28006797 ttgttgttaggggttt 28006812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 46262244 - 46262138
Alignment:
Q  46 ggtgtcttctccgaagtttcaagagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||||||  | |||  ||||||||||| |||||  ||||| || |  ||||||||||||||||||| |||||||||||||||||||||  ||||    
T  46262244 ggtgtcttctccggtgattcgtgagttgaggggtgcctttttgattggtgttgggagtctggtgggccgatcacttttgattcgagatcgggagctagtt 46262145  T
Q  146 tcttgac 152  Q
    |||||||    
T  46262144 tcttgac 46262138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 38485561 - 38485610
Alignment:
Q  95 ttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagt 144  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  38485561 ttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 38485610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 6584906 - 6584962
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  6584906 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 6584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 13311850 - 13311894
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  13311850 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 13311894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 10244195 - 10244250
Alignment:
Q  103 tctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  10244195 tctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 10244250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 27993639 - 27993568
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    ||||||||||| | |||  |||||||| || |||||||||||| |||||| |||||||||||||||||||||    
T  27993639 gagttgaggggtgtctttatgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcgggag 27993568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 34389973 - 34390015
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  34389973 agtctggtgggccgatcacttttgattcgagatcgggagtcag 34390015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 9349760 - 9349801
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  9349760 agtctggtgggccgatcacttttgattcgagatcgggagtca 9349801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 38306272 - 38306329
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||  ||||| |||||    
T  38306272 agtctggtgggccgatcacttttgattcgagattgggagtcagttctttgactcaagt 38306329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 6716806 - 6716762
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||| |||||||| |||||||||||||||||||||||||||    
T  6716806 agtctggttggccgatcacttttgattcgagatcgggagtcagtt 6716762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 12480901 - 12480941
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  12480901 tggtgggccgatcgcttttgattcgagatcgggagtcagtt 12480941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 11379197 - 11379154
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagt 144  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||    
T  11379197 agtctggtgagccgatcgcttttgattcgagatcgggagtcagt 11379154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 6718749 - 6718831
Alignment:
Q  70 gttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    |||||||||  ||| | |||||||||| ||||||| |||||  |||||  ||||||||||||||  |||||||||||||||||    
T  6718749 gttgaggggtacctcaatgatttgtttatggagtccggtggatcgatcaattttgattcgagatgaggagtcagtttcttgac 6718831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 8745166 - 8745208
Alignment:
Q  103 tctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  8745166 tctggtgggccgatcacttttgattcgagatcgggattcagtt 8745208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 46133362 - 46133304
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| | ||| ||||||||| ||||||| ||||||||| |||||||||||||||||    
T  46133362 tgatttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagtt 46133304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 47325955 - 47325913
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  47325955 agtctggtgggccgatcgcttttgatttgagatcgggagtcag 47325913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 25153212 - 25153265
Alignment:
Q  82 cttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcg 135  Q
    |||| |||||||| || |||||||||||| |||||| |||||||||||||||||    
T  25153212 cttaatgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcg 25153265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 42533322 - 42533281
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  42533322 agtctggtgggctgatcacttttgattcgagatcgggagtca 42533281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 3478367 - 3478407
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  3478367 tggtgggccgatcacttttgattcgagatcgggagttagtt 3478407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 33435120 - 33435164
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||    
T  33435120 agtctggtgagacgatcacttttgattcgagatcgggagtcagtt 33435164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 35206765 - 35206725
Alignment:
Q  99 ggagtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  35206765 ggagtctggtgggccgatcacttttgatccgagatcgggag 35206725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 23777735 - 23777664
Alignment:
Q  71 ttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    |||||||| |||||||| |||||||| || ||| |||| || ||||| |||||| ||||||||||| |||||    
T  23777735 ttgaggggtgccttagttatttgtttatgaagtttggttggtcgatcgcttttgcttcgagatcggaagtca 23777664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 2570138 - 2570208
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcggga 138  Q
    ||||||||||| |||||  ||| |||| || ||||||||||||||  ||| ||||||||||||| ||||||    
T  2570138 gagttgaggggtgcctttttgacttgtgtcaggagtctggtgggcttatcgcttttgattcgaggtcggga 2570208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 3419722 - 3419684
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  3419722 tggtgggctgatcacttttgattcgagatcgggagtcag 3419684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 17802885 - 17802851
Alignment:
Q  102 gtctggtgggccgatctcttttgattcgagatcgg 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  17802885 gtctggtgggccgatcacttttgattcgagatcgg 17802851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 41089818 - 41089776
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    |||||||||| |||||| ||||||||||||||| |||||||||    
T  41089818 agtctggtggaccgatcacttttgattcgagattgggagtcag 41089776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 3867131 - 3867184
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    |||||||| |||| |||||||||||||| ||||||||||||  ||||| |||||    
T  3867131 tggtgggctgatcacttttgattcgagaccgggagtcagttctttgactcaagt 3867184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 5860358 - 5860317
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    |||| |||||||| ||| ||||||||||||||||||||||||    
T  5860358 agtccggtgggcctatcgcttttgattcgagatcgggagtca 5860317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 23983206 - 23983247
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||||||| |||||  |||||||||||||||||||||||    
T  23983206 agtctggtgggtcgatcgtttttgattcgagatcgggagtca 23983247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 24324864 - 24324827
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    |||||||||||||  |||||||||||||||||||||||    
T  24324864 tggtgggccgatcaattttgattcgagatcgggagtca 24324827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 26386259 - 26386206
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagt 140  Q
    ||||||| || ||||||  ||||| |||||| ||||||||||||||||||||||    
T  26386259 tgatttgattttggagttcggtggtccgatcgcttttgattcgagatcgggagt 26386206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 48058724 - 48058679
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagttt 146  Q
    ||||||||||| ||||| ||||||||| |||||||| |||||||||    
T  48058724 agtctggtgggtcgatcgcttttgatttgagatcggaagtcagttt 48058679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 1320805 - 1320849
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||| | ||||| ||||||||    
T  1320805 agtctggtgggccgatcacttttgattcaaaatcggaagtcagtt 1320849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 2613966 - 2613902
Alignment:
Q  72 tgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgg 136  Q
    |||||||  ||||| |||||||  |||||| |||||| |||| ||| ||||||||||||||||||    
T  2613966 tgaggggtaccttactgatttgagtctggaatctggttggccaatcacttttgattcgagatcgg 2613902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 9428175 - 9428131
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||| ||||||| |||||||||||||||| | ||||||||    
T  9428175 agtctggtgagccgatcacttttgattcgagatcagaagtcagtt 9428131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 23144133 - 23144213
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    ||||| ||||| ||||  ||||||||||||| |||| |||| || ||||||| |||| |||||||| | |||||| |||||    
T  23144133 gagtttaggggtgcctctgtgatttgtttctagagtttggttggacgatctcatttggttcgagattgagagtcaatttct 23144213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 37795004 - 37795044
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||| ||  ||||||||||||||||||||||||||    
T  37795004 tggtgggccgttcagttttgattcgagatcgggagtcagtt 37795044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 12046191 - 12046318
Alignment:
Q  26 caagtttttgggatagttaaggtgtcttctccgaagtttcaagagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttga 125  Q
    |||||||||| | |||| ||||||||||||| |  | | || ||||| ||||| ||| |||||||||| ||| | ||| ||||||||||||| |||||||    
T  12046191 caagtttttgagttagtcaaggtgtcttctctggtggtccaggagttaaggggtgccatagtgatttgattcggaagtttggtgggccgatcacttttga 12046290  T
Q  126 ttcgagatcgggagtcag-tttcttgac 152  Q
    ||||||||||||| |||| |||||||||    
T  12046291 ttcgagatcgggactcagatttcttgac 12046318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 34378109 - 34378166
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  34378109 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgacacaagt 34378166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 28765703 - 28765621
Alignment:
Q  70 gttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgac 152  Q
    ||||||||| ||| || |||||| ||||| || ||||||||   |||| ||||||||||||||||| ||||||||||||||||    
T  28765703 gttgaggggtgccctaatgatttttttctagattctggtggattgatcacttttgattcgagatcgagagtcagtttcttgac 28765621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 698372 - 698413
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  698372 agtctggtggaccgatctcttttgattcgagatcgggagtca 698413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 13954304 - 13954263
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  13954304 agtctggtgggccgatcacttttgattcgagatcgggagtca 13954263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 7195309 - 7195265
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||    
T  7195309 agtctggtgagccgatcacttttgattcgagatcgggagtcagtt 7195265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 7392101 - 7392057
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  7392101 agtctggtggaccgatcacttttgattcgagatcgggagtcagtt 7392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 39184256 - 39184213
Alignment:
Q  102 gtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  39184256 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 39184213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 31721682 - 31721732
Alignment:
Q  95 ttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  31721682 ttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcagtt 31721732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 22675394 - 22675350
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||    
T  22675394 agtctggtggaccgatcgattttgattcgagatcgggagtcagtt 22675350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 25992018 - 25992062
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||    
T  25992018 agtctggtgggccaatcgcttttgattcgagatcgagagtcagtt 25992062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 33258952 - 33258908
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||    
T  33258952 agtctggtgggccgatcacttttgattcgagatcaggagttagtt 33258908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 25341676 - 25341741
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagat 133  Q
    ||||| ||||| |||||  |||| ||| || ||||||||||||||||||| ||||||||| |||||    
T  25341676 gagttcaggggtgccttgatgatgtgtgtcgggagtctggtgggccgatcacttttgatttgagat 25341741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 8730928 - 8730972
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||| || ||| ||||| |||||||||||||||||||||    
T  8730928 agtctggtggacctatcgcttttaattcgagatcgggagtcagtt 8730972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 21402903 - 21402863
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||| |||||  ||||||||||||||||||||    
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagtt 21402863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 23426355 - 23426399
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||| |||| | ||||||||||||||| |||||||||||    
T  23426355 agtctggtggaccgaacacttttgattcgagattgggagtcagtt 23426399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 27713080 - 27713124
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||| |||||||||||  ||||||||||||||||||| ||||||    
T  27713080 agtctagtgggccgatcgtttttgattcgagatcgggaatcagtt 27713124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 29087492 - 29087536
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||| | |||| |||||||||||||||| ||||||||||    
T  29087492 agtctggtggactgatcccttttgattcgagatcaggagtcagtt 29087536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 6358 - 6256
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggc 167  Q
    ||||||||||| | ||||||||||||||||| |||||||||| ||||||| | |||||||||||  ||  |||||||||||||||  ||  |||||||||    
T  6358 gagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaa--gtttttggc 6261  T
Q  168 ttgtt 172  Q
    |||||    
T  6260 ttgtt 6256  T

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Target: scaffold0127 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 31234 - 31336
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggc 167  Q
    ||||||||||| | ||||||||||||||||| |||||||||| ||||||| | |||||||||||  ||  |||||||||||||||  ||  |||||||||    
T  31234 gagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaa--gtttttggc 31331  T
Q  168 ttgtt 172  Q
    |||||    
T  31332 ttgtt 31336  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 10552265 - 10552323
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||    
T  10552265 tgatttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagtt 10552323  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 24995465 - 24995408
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  24995465 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 24995408  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 31207432 - 31207375
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  31207432 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 31207375  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 30236212 - 30236154
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| || || ||||||||||| ||||| |||||||||||||||||||||||||||    
T  30236212 tgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagtt 30236154  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 35062454 - 35062512
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| ||||| |||||||||||||||||  |||||||||||||||| |||||||||    
T  35062454 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgagagtcagtt 35062512  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 12883568 - 12883643
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagt 144  Q
    ||||||||||| |||||| | |||||||| ||||||||||||| |||||| | |||||||||||||||  |||||||    
T  12883568 gagttgaggggtgccttaataatttgtttatggagtctggtggaccgatcgc-tttgattcgagatcgaaagtcagt 12883643  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 15821463 - 15821407
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||| ||||  |||||||||||| |||| |||||||||||||||||||||||||    
T  15821463 tgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcag 15821407  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 15906697 - 15906741
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| | |||||||||||||||||||||||||    
T  15906697 agtctggtgggccgatcacatttgattcgagatcgggagtcagtt 15906741  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 32066365 - 32066323
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcag 143  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  32066365 agtctggtgggccgatcacttttgattcgaaatcgggagtcag 32066323  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 9519510 - 9519567
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||  ||||| |||||    
T  9519510 agtctagtgggccgatcagttttgattcgagatcgggagtcagttctttgactcaagt 9519567  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 34389075 - 34389018
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||  ||||| |||||    
T  34389075 agtctggtgggccgatcacttttgattcgagatcaagagtcagttctttgactcaagt 34389018  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 37986928 - 37986871
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||  ||||| |||||    
T  37986928 agtctggtgggccaatcatttttgattcgagatcgggagtcagttctttgactcaagt 37986871  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 16055302 - 16055222
Alignment:
Q  69 agttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttctt 149  Q
    |||||| ||| ||||  ||||||| ||||| |||||||||||||||||   ||||||||||||||  | ||||||||||||    
T  16055302 agttgaagggtgcctcggtgatttttttctagagtctggtgggccgataaattttgattcgagataagaagtcagtttctt 16055222  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 16457522 - 16457474
Alignment:
Q  110 ggccgatctcttttgattcgagatcgggagtcagtttcttgacccaagt 158  Q
    |||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  16457522 ggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 16457474  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 17657068 - 17657028
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  17657068 tggtgggtcgatcacttttgattcgagatcgggagtcagtt 17657028  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 33967335 - 33967375
Alignment:
Q  99 ggagtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  33967335 ggagtctggtgggccgatcacttttgattcgagatcaggag 33967375  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 36630848 - 36630892
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||||    
T  36630848 agtctggtgggccgatcacttttaattcgagatcgggtgtcagtt 36630892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 41893470 - 41893426
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||| | | |||||||||||||||||||||||||||    
T  41893470 agtctggtgggccaaccacttttgattcgagatcgggagtcagtt 41893426  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 32945787 - 32945732
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||||| ||||| ||| | |||||| |||| ||||||||||||||||||||||||    
T  32945787 tgatttgattctgaagtatagtgggctgatcacttttgattcgagatcgggagtca 32945732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 40531243 - 40531281
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggag 139  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  40531243 agtctgatgggccgatcacttttgattcgagatcgggag 40531281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 544434 - 544385
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgg 136  Q
    |||||||| || ||||||||||||| ||||| |||| |||||||||||||    
T  544434 tgatttgtgtcgggagtctggtgggtcgatcactttagattcgagatcgg 544385  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 5221922 - 5221869
Alignment:
Q  87 tgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagt 140  Q
    ||||||| || ||||| |||||||||||||| |||||||||||| ||| |||||    
T  5221922 tgatttggttttggaggctggtgggccgatcgcttttgattcgaaatcaggagt 5221869  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 12789613 - 12789532
Alignment:
Q  67 agagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    ||||||||| || | || |||||||||||||||   | ||||||||||||  |||||| ||||||||||| ||||| |||||    
T  12789613 agagttgagtggtgtctgagtgatttgtttctgtgatatggtgggccgattgcttttgcttcgagatcggaagtcaatttct 12789532  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 46329 - 46249
Alignment:
Q  68 gagttgaggggcgccttagtgatttgtttctggagtctggtgggccgatctcttttgattcgagatcgggagtcagtttct 148  Q
    ||||||||||| |||||  ||| |||| || ||||||| ||||||| ||| |||||||||| || |||||||  |||||||    
T  46329 gagttgaggggtgcctttttgacttgtgtcgggagtcttgtgggccaatcgcttttgattccaggtcgggagcaagtttct 46249  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 10248619 - 10248579
Alignment:
Q  105 tggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||| |||||| |||||||||| ||||||||||||||||    
T  10248619 tggtggaccgatcacttttgattcaagatcgggagtcagtt 10248579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 12898344 - 12898300
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    |||||||||  |||||| |||||||||||||||| ||||||||||    
T  12898344 agtctggtgacccgatcacttttgattcgagatccggagtcagtt 12898300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 17819903 - 17819863
Alignment:
Q  72 tgaggggcgccttagtgatttgtttctggagtctggtgggc 112  Q
    ||||||| |||||| |||||||||| |||||||||||||||    
T  17819903 tgaggggtgccttactgatttgtttatggagtctggtgggc 17819863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 1087 - 1043
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  1087 agtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 19394 - 19438
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  19394 agtctggtgggccgatcacttttgattcgagatcggaagtcagtt 19438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 42208 - 42164
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  42208 agtctggtgggccgatcacttttgattcgagatcggaagtcagtt 42164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 35841 - 35800
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtca 142  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  35841 agtctagtgggccgatcacttttgattcgagatcgggagtca 35800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 36718 - 36762
Alignment:
Q  101 agtctggtgggccgatctcttttgattcgagatcgggagtcagtt 145  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||    
T  36718 agtctggcgggctgatcacttttgattcgagatcgggagtcagtt 36762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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