View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_28 (Length: 331)
Name: NF9771_low_28
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 40092925 - 40093254
Alignment:
| Q |
1 |
gtggacgctcattttccacatatgctttaggaacttcactttctggctttctataaaatggtggacaaccttcaatcatctagagtaacagaaaaccata |
100 |
Q |
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| T |
40092925 |
gtggacgctcattttccacatatgctttaggaacttcactttctggctttctataaaatggtggacaaccttcaatcatctagagtaacagaaaaccata |
40093024 |
T |
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| Q |
101 |
tatatttagccagtattttgcaaacatctatatgaataacaatccactgatggttgtcaacctgtatattttagtctatacatctacgttaaaagtgggc |
200 |
Q |
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| T |
40093025 |
tatatttagccagtattttgcaaacatctctatgaataacaatccactgatggttgtcaacctgtatattttagtctatacatctacgttaaaagtgggc |
40093124 |
T |
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| Q |
201 |
tccaatcttacacaaaacttgtcatatcacaaacagtatgtaaagccgttaacaagaacactgtctttacatt--nnnnnnnttaggaagaacaaaagaa |
298 |
Q |
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|||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40093125 |
tccaatattacacaaaaattatcatatcacaaacagtatgtaaagccgttaacaagaacactgtctttacattaaaaaaaaattaggaagaacaaaagaa |
40093224 |
T |
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| Q |
299 |
ccaggcaaactttgatataacacgaaactc |
328 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40093225 |
ccaggcaaactttgatataacacgaaactc |
40093254 |
T |
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