View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_29 (Length: 325)
Name: NF9771_low_29
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 310
Target Start/End: Original strand, 51268064 - 51268369
Alignment:
| Q |
6 |
aggcccccataaaaaacaaacggtgtctcgtagtggaaaaggtttccacccatcaagattcccacaaagcaaagcatacatatatagttcaaacgatgtc |
105 |
Q |
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| T |
51268064 |
aggcccccataaaaaacaaacggtgtctcgtagtggaaaaggtttccacccatcaagattcccacaaagcaaagcatacatatatagttcaaacgatgtc |
51268163 |
T |
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| Q |
106 |
acacagttacaattttcagctgttcgatctaaatcaacggacgatatcatttaactgcatgaaattatttgtttaatttagatcaaccaatctttgttta |
205 |
Q |
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| T |
51268164 |
acgcagttacaattttcagctgttcgatctaaatcaacggacgatatcatttaactgcatgaaattatttgtttaatttagatcaaccaatctttgttta |
51268263 |
T |
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| Q |
206 |
at-aaaaaagatcaaccaatcttaaatcaatgggtgagattaattactgcattaaactctctgaacttgcgacttcaggaaattcgggtccataacatat |
304 |
Q |
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| T |
51268264 |
ataaaaaaagatcaaccaatcttaaatcaatgggtgagatcaattactctattaaactctctgaacttgcgacttcaggaaattcgggtccataacatat |
51268363 |
T |
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| Q |
305 |
tcatag |
310 |
Q |
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|||||| |
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| T |
51268364 |
tcatag |
51268369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 23306164 - 23306358
Alignment:
| Q |
16 |
aaaaaacaaacggtgtctcgtagtggaaaaggtttcca-------cccatc-aagattccc----acaaagcaaagcatacatatatagttcaaacgatg |
103 |
Q |
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| T |
23306164 |
aaaaaacaaactgtgtctcgtagtggaaagggtttccagtctccacccatccaagattccctcccacaaagcaaagcatacatatatagctcaaaaaatg |
23306263 |
T |
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| Q |
104 |
tcacacagttacaattttcagctgttcgatctaaatcaacggacgatatcatttaactgcatgaaattatttgtttaatttagatcaaccaatct |
198 |
Q |
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| T |
23306264 |
tcacatagttataacttccagccgttcgatataaatcaacgggcaagatcatttaactgcatgaaattgtttgtttgatttagatcatccaatct |
23306358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 23306345 - 23306427
Alignment:
| Q |
213 |
agatcaaccaatcttaaatcaatgggtgagattaattactgcattaaactctctgaacttgcgacttcaggaaattcgggtcc |
295 |
Q |
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| T |
23306345 |
agatcatccaatctcaaatcaatgggtgggatcaattactgcatgaaactctctgaacttgcgacttcataaaatccgggtcc |
23306427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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