View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_30 (Length: 317)
Name: NF9771_low_30
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 48397505 - 48397793
Alignment:
| Q |
20 |
atgctaccatcaccaggcatgggacatcttataccaatgattgaatttgccaaaagaattattattcttaatcaaaatcttcaaatctccttcttcattc |
119 |
Q |
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| T |
48397505 |
atgctaccatcaccaggcatgggacatcttataccaatgattgaatttgccaaaagaattattattcttaatcaaaatcttcaaatcaccttcttcattc |
48397604 |
T |
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| Q |
120 |
ccaccgaaggtccaccttcaaaagctcaaaaaacagttcttcaatctctaccaaagtccatttcacatactttccttccaccagtttccttctcagacct |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48397605 |
ccaccgaaggtccaccttcaaaagctcaaaaaacagttcttcaatctctaccaaagttcatttcacatactttccttccaccagtttccttctcagacct |
48397704 |
T |
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| Q |
220 |
tccaccaaactccgggatagagacaatcatctccctcactgtcctccgttctctcccttctctccgtcaaaacttcaacactctctctg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48397705 |
tccaccaaactccgggatagagacaatcatctccctcactgtcctccgttctctcccttctctccgtcaaaacttcaacactctctctg |
48397793 |
T |
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