View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_31 (Length: 314)
Name: NF9771_low_31
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 13903800 - 13904034
Alignment:
| Q |
17 |
gtatatccatgcaagccctgggttcttcgtaggtcctcagatgaatcaaattttctctaatatcatgaaaagatatgaccaaggaagcgcctaactcgat |
116 |
Q |
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| T |
13903800 |
gtatatccatgcaagccctgggttctttgtaggtcctcagatgaatcaaactttctctaatatcatgaaaagatatgaccagggaagcgcctaactcgat |
13903899 |
T |
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| Q |
117 |
catcctttctcacatcatcatcacttcataaatttatataggtgaacatgatgtttccatctgagtcgatcgacggaagacgatattcaacactgcccac |
216 |
Q |
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| T |
13903900 |
catcctttctcacatcatcgtcatttcataaatttatataggtgaaccggatgtttccatctaagtcgatcgacggacgacgatattcaacactgcccac |
13903999 |
T |
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| Q |
217 |
ccttcttgcgtctatgaggttgtgaagaccgttaa |
251 |
Q |
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| T |
13904000 |
ccttcttgcatctatgaggttgagaagaccgttaa |
13904034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 13904085 - 13904140
Alignment:
| Q |
248 |
ttaaaaagattaggcttcccctcgttgtactaaactacaactaacttagtgttcat |
303 |
Q |
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| T |
13904085 |
ttaaaaagattaggcttcccctcgttgtactaaactacaactaacttagtgttcat |
13904140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 31849145 - 31849084
Alignment:
| Q |
157 |
ggtgaacatgatgtttccatctgagtcgatcgacggaagacgatattcaacactgcccaccc |
218 |
Q |
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| T |
31849145 |
ggtgaactagatgcttccatctgagtcgatcgatggacatcgatattcaacacttcccaccc |
31849084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 33716464 - 33716522
Alignment:
| Q |
59 |
gaatcaaattttctctaatatcatgaaaagatatgaccaaggaagcgcctaactcgatc |
117 |
Q |
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| T |
33716464 |
gaatcaaactatccctaatatcatgaaaagatatgaccaaggaagcttctaaatcgatc |
33716522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 30720174 - 30720218
Alignment:
| Q |
59 |
gaatcaaattttctctaatatcatgaaaagatatgaccaaggaag |
103 |
Q |
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| T |
30720174 |
gaatcaaattttctcgaatatcttgaaaagatctaaccaaggaag |
30720218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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