View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_32 (Length: 312)
Name: NF9771_low_32
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 33319882 - 33319597
Alignment:
| Q |
18 |
atgattgagatcaaatttagaacaggagaaatgttggagtgtatgagaagacttgatcagcaactgattactctgaaggaaaaactttcggaagccaaga |
117 |
Q |
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| T |
33319882 |
atgattgagatcaaatttagaacaggagaaatgttggagtgtatgagaagacttgatcagcaactgattactctgaaggaaaaactttcggaagccaaga |
33319783 |
T |
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| Q |
118 |
gcaacaaggactttggtacatatgattctctgcaacagcagattagattccgtgagaaacagcttttgcctttgtatactcagatagctatcaagtttgt |
217 |
Q |
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| T |
33319782 |
gcaacaaggactttggtacatatgattctctgcaacagcagattagattccgtgagaaacagcttttgcctttgtatactcagatagctatcaagtttgt |
33319683 |
T |
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| Q |
218 |
tgaactgcatgatacttccttaaaaatggctgcaataggcgcaatgaaagaagttattgattggcgtgactcacgttctttcttct |
303 |
Q |
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| T |
33319682 |
tgaactgcatgatacttccttaaaaatggctgcaataggcgcaatgaaagaagttattgattggcgtgactcacgttctttcttct |
33319597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 33345004 - 33344719
Alignment:
| Q |
18 |
atgattgagatcaaatttagaacaggagaaatgttggagtgtatgagaagacttgatcagcaactgattactctgaaggaaaaactttcggaagccaaga |
117 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||||||| |
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| T |
33345004 |
atgattgagatcaaatttagaacaagagaattgttggagtgtatgagaagacttgatcaacaattgattactttgaaggaaaaactttctgaagccaaga |
33344905 |
T |
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| Q |
118 |
gcaacaaggactttggtacatatgattctctgcaacagcagattagattccgtgagaaacagcttttgcctttgtatactcagatagctatcaagtttgt |
217 |
Q |
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| T |
33344904 |
gtaacaaagactttggtgcatatgattctctgcagcagcagattagattccgtgagaaacagcttttgcctttgtatactcagatagctaccaaatttgc |
33344805 |
T |
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| Q |
218 |
tgaactgcatgatacttccttaaaaatggctgcaataggcgcaatgaaagaagttattgattggcgtgactcacgttctttcttct |
303 |
Q |
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|||||| ||||||||||| |||| |||| |||| || | ||| | |||||| ||||||||||| |||| |||||| |||||| |
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| T |
33344804 |
tgaactccatgatacttcattaagaatgaaagcaaagggtgtaatcagggaagttcttgattggcgtaactcgcgttctgtcttct |
33344719 |
T |
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