View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_33 (Length: 310)
Name: NF9771_low_33
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 4889576 - 4889295
Alignment:
| Q |
13 |
aacctgtgatacgcaatgctcaccgtatagcgatgagaatgatgtaatttccaagcccacgtgtcttccacatcaacctataaaacaactagattttaaa |
112 |
Q |
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| T |
4889576 |
aacctgtgatacgcaatgctcaccgtatagcgatgagaatgatgtaatttccaaacccacgtgtcttccacatcaacctataaaacaactagattttaaa |
4889477 |
T |
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| Q |
113 |
actcaagacacttccctgccaacttctcctcccaaacagagccacttcatccacttccacgcctctcctttccctccccatcttatatttttcaattaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4889476 |
actcaagacacttccctgccaacttctcctcccaaacagagccacttcatccactttcacgactctcctttccctccccatcttatatttttcaattaca |
4889377 |
T |
|
| Q |
213 |
atagctaatttgttctccgctaactcatgtaacctaccgaatctaactagaaaaggtacgccatctacgaataggtccttcc |
294 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
4889376 |
ataactaatttgttctccgctaactcatgtaacctaccgaatctaactagaaaagatacgccatctaacaataggtccttcc |
4889295 |
T |
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