View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_34 (Length: 306)
Name: NF9771_low_34
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 32996145 - 32995869
Alignment:
| Q |
1 |
caaacaaatgcaaaacaccaaacagctagaagcagaatcacagaaacaccccactcagcaacaaaaaattaaattatcaatttgagcttggatgcatgta |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32996145 |
caaacagatgcaaaacaccaaacagctagaagcagaagcacagaaacaccccactcaacaacaaaaaattaaattatcaatttgagcttggatgcatgta |
32996046 |
T |
|
| Q |
101 |
aattaatcgcaatggcatattataattaacgataaatcttgcaaatgtcatcgatacaattacaaaccatagtctattaatacgatacacacccatcaga |
200 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32996045 |
aattaatcgcaatgacatattataattaacgataaatcttgcaaatgtcatcgatacaattacaaaccatagtctattaatacgatacacacccatcgga |
32995946 |
T |
|
| Q |
201 |
tactacattatatgatcaaacatacaaataaactatcatttttatcagttcatcattccttttaacattaatcaaat |
277 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
32995945 |
tactacattatatgatcaaatatacaaataaactatcatttttatcagttcattattccttttagcattaatcaaat |
32995869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 42545204 - 42545265
Alignment:
| Q |
216 |
tcaaacatacaaataaactatcatttttatcagttcatcattccttttaacattaatcaaat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
42545204 |
tcaaacatacaaataaactatcatttttatcagttcataattccttttaacattaatcaaat |
42545265 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 54713561 - 54713502
Alignment:
| Q |
218 |
aaacatacaaataaactatcatttttatcagttcatcattccttttaacattaatcaaat |
277 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||||||| |
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|
| T |
54713561 |
aaacatacaaataaactttcatttttaacagttgattattccttttagcattaatcaaat |
54713502 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 279952 - 279891
Alignment:
| Q |
216 |
tcaaacatacaaataaactatcatttttatcagttcatcattccttttaacattaatcaaat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
279952 |
tcaaacatacaaataaactatcatttttatcagttcataattccttttagcattaatcaaat |
279891 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 7423896 - 7423835
Alignment:
| Q |
216 |
tcaaacatacaaataaactatcatttttatcagttcatcattccttttaacattaatcaaat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| |
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|
| T |
7423896 |
tcaaacatacaaataaactatcatttttatcggttcataattccttttagcattaatcaaat |
7423835 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 25877256 - 25877294
Alignment:
| Q |
239 |
tttttatcagttcatcattccttttaacattaatcaaat |
277 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
25877256 |
tttttatcagttcataattccttttagcattaatcaaat |
25877294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 24728201 - 24728142
Alignment:
| Q |
218 |
aaacatacaaataaactatcatttttatcagttcatcattccttttaacattaatcaaat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||| |
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|
| T |
24728201 |
aaacatacaaataaactatcatttttatcagttcattattccttttagcaataatcaaat |
24728142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 31148089 - 31148136
Alignment:
| Q |
230 |
aaactatcatttttatcagttcatcattccttttaacattaatcaaat |
277 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||| |||||||||||| |
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|
| T |
31148089 |
aaactatcatttttattagttgattattccttttagcattaatcaaat |
31148136 |
T |
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