View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_35 (Length: 306)
Name: NF9771_low_35
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 49876543 - 49876822
Alignment:
| Q |
8 |
tttccattccattccattgttcttctaaaaatgatgcaagtgcaagttcctgtgactcacaaaatcaaccatctcttcaatttccttcagaatcatcctt |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49876543 |
tttcctttccattccattgttcttctaaaaatgatgcaagtgcaagttcctgtgactcacaaaatcaaccatctcttcaatttccttcagaatcatcctt |
49876642 |
T |
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| Q |
108 |
cttcaatagctctcaatctctgcaaatattccgctcttttcctcgctctactcgccacctttcgcaccattttcatcattaaattccccnnnnnnnctcc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |
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| T |
49876643 |
cttcaatagctctcaatctctgcaaatattccgctcttttcctcgctctactcgccacctttcacaccattttcatcatcaaattccccaaaaaaactcc |
49876742 |
T |
|
| Q |
208 |
ttctcttcctcctctcattgctcaagatgatttcagcgacagtgaagatgaaacctgctcgttgtcgtccatgtcatcgg |
287 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49876743 |
ttctcttcctcctctcattgctgaagatgatttcggcgacagtgaagatgaaacctgctcgttgtcatccatgtcatcgg |
49876822 |
T |
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