View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9771_low_36 (Length: 303)
Name: NF9771_low_36
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 24062126 - 24062292
Alignment:
| Q |
1 |
agatgtatctact-aaaaaaggtctccaacaaggaaccgatttccgcaaggcgacaggcatcgaggacccacatccctcaacgagtttctcaacctcgca |
99 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24062126 |
agatgtatctactgaaaaaaggtctccgacaaggaaccgatttccgcaaggcgacaggcatcgaggacccacatccctcaacgagtttctcaacctcgca |
24062225 |
T |
|
| Q |
100 |
aaatccaacatcaggtacgacgagaaactcattgccagttattttggaaatcaagaaaagaggatcc |
166 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24062226 |
aaatccaacatcaggtacgaggagaaactcatcgccagttattttggaaatcaagaaaagaggatcc |
24062292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 24062367 - 24062429
Alignment:
| Q |
241 |
aggatatggttgtcattttagtgatcacacaccactagtcgtctcaagggataaaactctctt |
303 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24062367 |
aggacatggttgtcattttagtgatcacacaccactagtcgtctcaagggataaaactctctt |
24062429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 16701878 - 16701919
Alignment:
| Q |
73 |
tccctcaacgagtttctcaacctcgcaaaatccaacatcagg |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
16701878 |
tccctcgacgagtttctcaacctcgcaaaaacctacatcagg |
16701919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University