View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_40 (Length: 290)
Name: NF9771_low_40
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 8858942 - 8858685
Alignment:
| Q |
19 |
gaattagcacaggcacgttgcactttctcccaaatcccatctctaaaccacgcatgcactgcaaaagagcaatcaaagaaaacatgatgaagatcttcag |
118 |
Q |
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||||||||||| | |||||||||||||||| |||||| | ||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8858942 |
gaattagcacaagaacgttgcactttctcctgaatccctgcactaaaccacacctgcaccaaaaaagagcaatcaaagaaaacatgatgaagatcttcag |
8858843 |
T |
|
| Q |
119 |
acggtccatcgcaaacaacacaaattagaggacattgaactccattatcctgaaaatcaacacgggtggggagacaccctctacacatacgccagattag |
218 |
Q |
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||||||||||||||| || |||| ||||||||||| ||||||| |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
8858842 |
acggtccatcgcaaaaaatacaacttagaggacatggaactcctttatcctgaaaacgaacacggatggggagacaccctctacacatacaccagattag |
8858743 |
T |
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| Q |
219 |
atttttaatcttcggaggaactcttaacctcaaaatcccgaaccaatttctggctctc |
276 |
Q |
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||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||| |
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| T |
8858742 |
atttttaatcttcagaggaactcttaacctgcaaatcccagaccaatttccggctctc |
8858685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 11152980 - 11153094
Alignment:
| Q |
19 |
gaattagcacaggcacgttgcactttctcccaaatcccatctctaaaccacgcatgcactgcaaaagagcaatcaaagaaaacatgatgaagatcttcag |
118 |
Q |
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||||||||||| ||||||||||||||||||| |||||| ||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11152980 |
gaattagcacaagcacgttgcactttctcccgaatccctgctctaaaccacacctgcaccaaaaaagagcaatcaaagaaaacatgatgaagatcttcag |
11153079 |
T |
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| Q |
119 |
acggtccatcgcaaa |
133 |
Q |
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| T |
11153080 |
acggtccatcgcaaa |
11153094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 45637339 - 45637101
Alignment:
| Q |
19 |
gaattagcacaggcacgttgcactttctcccaaatcccatctctaaaccacgcatgcactgcaaaagagcaatcaaagaaaacatgatgaagatcttcag |
118 |
Q |
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||||||| ||||||| |||| ||||||||||| | |||| || ||| |||| ||||||| ||||| || ||||||||||||| ||| || | |||||||| |
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| T |
45637339 |
gaattagaacaggcatgttgtactttctcccacagcccagctttaagccacacatgcaccgcaaaggaacaatcaaagaaaatatggtgcatatcttcag |
45637240 |
T |
|
| Q |
119 |
acggtccatcgcaaacaacacaaattagaggacattgaactccattatcctgaaaatcaacacgggtggggagacaccctctacacatacgccagattag |
218 |
Q |
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| |||| ||| |||||||||||| | || || |||||||||| |||||||| ||| ||||||||| || | ||||||||||||| ||||||||||| |
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| T |
45637239 |
aaggtctatcacaaacaacacaactcagggggcattgaactcatttatcctgtaaacgaacacgggtaggaaagaaccctctacacattcgccagattag |
45637140 |
T |
|
| Q |
219 |
atttttaatcttcggaggaactcttaacctcaaaatccc |
257 |
Q |
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| T |
45637139 |
atttttaatcttttgaggaacttttaaccgccaaatccc |
45637101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 92 - 247
Target Start/End: Complemental strand, 41343417 - 41343262
Alignment:
| Q |
92 |
caaagaaaacatgatgaagatcttcagacggtccatcgcaaacaacacaaattagaggacattgaactccattatcctgaaaatcaacacgggtggggag |
191 |
Q |
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|||||||||||||||| | |||||| | || ||||| |||||||||||| | ||||||||||||||||| |||||||||| | ||||||||| || | |
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| T |
41343417 |
caaagaaaacatgatgcacatcttcgggaggaccatcacaaacaacacaactcagaggacattgaactcctttatcctgaagacgaacacgggtaggaaa |
41343318 |
T |
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| Q |
192 |
acaccctctacacatacgccagattagatttttaatcttcggaggaactcttaacc |
247 |
Q |
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|||||||||||||||||||| ||||||||||||| ||| ||||||||| |||||| |
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| T |
41343317 |
gcaccctctacacatacgccaaattagatttttaaccttaggaggaacttttaacc |
41343262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 8273952 - 8273801
Alignment:
| Q |
19 |
gaattagcacaggcacgttgcactttctcccaaatcccatctctaaaccacgcatgcactgcaaaagagcaatcaaagaaaacatgatgaagatcttcag |
118 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| | |||| |||||| ||| | ||||| ||||| | || ||||||||||||||||| | ||||| | |
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| T |
8273952 |
gaattagcacaggcatgttgtactttctcccacagcccagctctaagccatacttgcaccgcaaagggacagtcaaagaaaacatgatgcacatctttgg |
8273853 |
T |
|
| Q |
119 |
acggtccatcgcaaacaacacaaattagaggacattgaactccattatcctg |
170 |
Q |
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| ||||||||||||||||||||| | || |||||||||||||| |||||||| |
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| T |
8273852 |
aaggtccatcgcaaacaacacaactcaggggacattgaactcctttatcctg |
8273801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 18685364 - 18685402
Alignment:
| Q |
79 |
gcaaaagagcaatcaaagaaaacatgatgaagatcttca |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
18685364 |
gcaaaagagcaatcaaagaaaacatgatgaagattttca |
18685402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 11501541 - 11501479
Alignment:
| Q |
178 |
acacgggtggggagacaccctctacacatacgccagattagatttttaatcttcggaggaact |
240 |
Q |
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|||||||| || ||||| |||| |||||||||||| |||| ||| |||| ||||||||||||| |
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| T |
11501541 |
acacgggtcggaagacagcctcgacacatacgccaaattaaattcttaaccttcggaggaact |
11501479 |
T |
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