View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9771_low_41 (Length: 282)

Name: NF9771_low_41
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9771_low_41
NF9771_low_41
[»] chr8 (34 HSPs)
chr8 (82-245)||(8102906-8103069)
chr8 (134-248)||(7944520-7944634)
chr8 (54-250)||(41677092-41677288)
chr8 (65-248)||(5973038-5973219)
chr8 (134-248)||(11290175-11290289)
chr8 (136-250)||(39332405-39332519)
chr8 (134-247)||(15078750-15078863)
chr8 (146-250)||(5721548-5721652)
chr8 (134-250)||(15167413-15167529)
chr8 (148-238)||(42600783-42600873)
chr8 (158-250)||(5942685-5942777)
chr8 (146-238)||(45475818-45475910)
chr8 (137-250)||(25561496-25561607)
chr8 (146-238)||(23606639-23606731)
chr8 (146-238)||(23798271-23798363)
chr8 (146-238)||(30883330-30883422)
chr8 (146-238)||(37430168-37430260)
chr8 (148-238)||(10917392-10917482)
chr8 (146-248)||(34789872-34789974)
chr8 (149-238)||(3048530-3048619)
chr8 (146-238)||(2952231-2952323)
chr8 (146-238)||(5860754-5860846)
chr8 (146-238)||(13534697-13534788)
chr8 (146-238)||(13624237-13624328)
chr8 (134-238)||(41879182-41879286)
chr8 (60-250)||(34048634-34048821)
chr8 (150-250)||(23941105-23941205)
chr8 (134-244)||(8646201-8646310)
chr8 (136-248)||(14509983-14510094)
chr8 (136-182)||(34868177-34868223)
chr8 (61-218)||(30674330-30674485)
chr8 (136-181)||(9108551-9108596)
chr8 (134-175)||(38009150-38009191)
chr8 (60-124)||(14509906-14509970)
[»] chr7 (39 HSPs)
chr7 (133-250)||(7398440-7398557)
chr7 (134-250)||(27237420-27237536)
chr7 (60-244)||(2611186-2611369)
chr7 (149-250)||(9021812-9021912)
chr7 (133-250)||(12981315-12981432)
chr7 (148-250)||(18201126-18201228)
chr7 (60-250)||(23859062-23859250)
chr7 (53-250)||(12419413-12419608)
chr7 (146-238)||(19692095-19692187)
chr7 (134-246)||(36891571-36891683)
chr7 (136-250)||(6765680-6765794)
chr7 (148-238)||(20091292-20091382)
chr7 (146-238)||(8171548-8171640)
chr7 (146-238)||(12596296-12596388)
chr7 (146-238)||(29077221-29077313)
chr7 (143-238)||(38414882-38414977)
chr7 (137-235)||(36902924-36903022)
chr7 (148-238)||(48983855-48983945)
chr7 (146-238)||(10955485-10955577)
chr7 (146-238)||(18776775-18776867)
chr7 (135-227)||(23744808-23744900)
chr7 (146-238)||(24525694-24525786)
chr7 (134-238)||(8239688-8239792)
chr7 (146-238)||(10329419-10329511)
chr7 (150-250)||(20153190-20153290)
chr7 (148-215)||(33162350-33162417)
chr7 (146-238)||(47984978-47985071)
chr7 (158-238)||(23551092-23551172)
chr7 (150-237)||(38971255-38971341)
chr7 (134-243)||(23020481-23020589)
chr7 (146-215)||(26254017-26254086)
chr7 (147-234)||(28749715-28749801)
chr7 (150-250)||(9014782-9014875)
chr7 (146-222)||(21763596-21763672)
chr7 (186-248)||(17800270-17800332)
chr7 (195-238)||(25010434-25010477)
chr7 (136-178)||(9014177-9014219)
chr7 (53-91)||(18201281-18201319)
chr7 (158-218)||(26917728-26917788)
[»] scaffold1590 (1 HSPs)
scaffold1590 (69-250)||(193-372)
[»] chr1 (42 HSPs)
chr1 (60-248)||(45758496-45758684)
chr1 (146-250)||(38547045-38547149)
chr1 (52-250)||(39134637-39134836)
chr1 (146-238)||(5316692-5316784)
chr1 (146-238)||(23185439-23185531)
chr1 (146-240)||(6771801-6771895)
chr1 (146-236)||(16140069-16140159)
chr1 (64-248)||(5533314-5533496)
chr1 (146-238)||(9173032-9173124)
chr1 (146-238)||(9181014-9181106)
chr1 (146-238)||(14146312-14146404)
chr1 (146-238)||(27559649-27559741)
chr1 (146-246)||(38853527-38853626)
chr1 (136-248)||(43235767-43235881)
chr1 (150-250)||(26803948-26804045)
chr1 (146-240)||(50881440-50881534)
chr1 (146-238)||(1366887-1366979)
chr1 (146-238)||(4971627-4971719)
chr1 (146-238)||(5027561-5027653)
chr1 (146-238)||(17168968-17169060)
chr1 (150-250)||(33170759-33170859)
chr1 (146-238)||(44655753-44655845)
chr1 (136-250)||(6221678-6221791)
chr1 (148-238)||(19955729-19955819)
chr1 (146-238)||(3406430-3406522)
chr1 (146-238)||(3440298-3440390)
chr1 (148-240)||(40501801-40501893)
chr1 (134-239)||(50146307-50146412)
chr1 (150-237)||(51607452-51607540)
chr1 (134-225)||(35392295-35392385)
chr1 (134-250)||(10925950-10926067)
chr1 (148-238)||(13913491-13913583)
chr1 (146-229)||(21740946-21741029)
chr1 (146-238)||(41697146-41697238)
chr1 (146-215)||(22865470-22865538)
chr1 (193-238)||(44895664-44895709)
chr1 (74-124)||(24183785-24183834)
chr1 (146-215)||(6889646-6889715)
chr1 (146-215)||(6891492-6891561)
chr1 (146-183)||(27906738-27906775)
chr1 (134-178)||(17322620-17322664)
chr1 (206-238)||(27906786-27906818)
[»] chr5 (44 HSPs)
chr5 (134-250)||(34425892-34426008)
chr5 (134-250)||(36868871-36868987)
chr5 (136-250)||(14318382-14318496)
chr5 (61-248)||(33037771-33037958)
chr5 (134-250)||(1366521-1366637)
chr5 (134-246)||(2024637-2024749)
chr5 (146-238)||(27079012-27079104)
chr5 (62-250)||(2530823-2531008)
chr5 (60-250)||(11242242-11242429)
chr5 (146-238)||(9364292-9364384)
chr5 (146-238)||(34756373-34756465)
chr5 (134-250)||(40794322-40794438)
chr5 (60-250)||(24395728-24395915)
chr5 (146-238)||(19523200-19523292)
chr5 (146-238)||(28822349-28822441)
chr5 (136-250)||(2412077-2412191)
chr5 (134-248)||(10407452-10407566)
chr5 (136-250)||(10543663-10543776)
chr5 (53-235)||(26718865-26719045)
chr5 (53-235)||(26988609-26988789)
chr5 (146-240)||(36187886-36187980)
chr5 (146-238)||(16198801-16198893)
chr5 (146-238)||(16799334-16799426)
chr5 (146-238)||(30854330-30854422)
chr5 (146-238)||(38869370-38869462)
chr5 (137-248)||(22648734-22648845)
chr5 (146-238)||(15480096-15480188)
chr5 (149-237)||(27924084-27924172)
chr5 (146-234)||(31194619-31194706)
chr5 (146-215)||(7338023-7338092)
chr5 (146-238)||(2274891-2274983)
chr5 (146-238)||(16592081-16592173)
chr5 (146-238)||(23284069-23284161)
chr5 (146-238)||(40389543-40389635)
chr5 (136-250)||(41911614-41911728)
chr5 (146-234)||(7670929-7671018)
chr5 (146-238)||(22986565-22986657)
chr5 (134-182)||(606211-606259)
chr5 (146-234)||(31881441-31881528)
chr5 (146-248)||(17344947-17345049)
chr5 (158-247)||(15639635-15639724)
chr5 (135-179)||(27530543-27530587)
chr5 (147-178)||(22875003-22875034)
chr5 (134-175)||(35080765-35080806)
[»] chr4 (54 HSPs)
chr4 (64-248)||(52468282-52468463)
chr4 (146-250)||(27112024-27112128)
chr4 (134-250)||(10041997-10042113)
chr4 (150-250)||(24396928-24397028)
chr4 (53-250)||(36118377-36118571)
chr4 (146-238)||(54780783-54780875)
chr4 (68-238)||(47128993-47129161)
chr4 (52-250)||(51691837-51692030)
chr4 (134-238)||(2790738-2790842)
chr4 (146-238)||(37777232-37777324)
chr4 (146-238)||(38209600-38209692)
chr4 (134-250)||(39329389-39329505)
chr4 (146-238)||(43455540-43455632)
chr4 (157-248)||(4167911-4168002)
chr4 (146-238)||(32915391-32915483)
chr4 (147-240)||(5128852-5128945)
chr4 (146-238)||(10978906-10978998)
chr4 (146-238)||(34027585-34027677)
chr4 (146-238)||(34768583-34768675)
chr4 (146-248)||(37744918-37745021)
chr4 (134-236)||(35465115-35465216)
chr4 (157-239)||(35779345-35779427)
chr4 (146-232)||(37514671-37514757)
chr4 (148-238)||(54083253-54083343)
chr4 (147-244)||(2135331-2135428)
chr4 (146-238)||(1105538-1105630)
chr4 (146-230)||(32128598-32128682)
chr4 (146-250)||(36178667-36178770)
chr4 (134-250)||(36362868-36362983)
chr4 (150-250)||(45656169-45656269)
chr4 (146-238)||(48209246-48209338)
chr4 (159-238)||(40089522-40089601)
chr4 (146-238)||(16845027-16845120)
chr4 (149-250)||(40217226-40217327)
chr4 (146-238)||(13460213-13460305)
chr4 (135-217)||(39655252-39655334)
chr4 (146-240)||(10428206-10428308)
chr4 (146-238)||(19498510-19498600)
chr4 (146-250)||(15735089-15735188)
chr4 (150-250)||(29425187-29425287)
chr4 (147-212)||(17679432-17679497)
chr4 (146-226)||(16882404-16882484)
chr4 (60-177)||(30507044-30507162)
chr4 (186-238)||(23509847-23509899)
chr4 (146-200)||(9578673-9578728)
chr4 (136-179)||(24614018-24614061)
chr4 (195-238)||(24969443-24969486)
chr4 (195-238)||(38352313-38352356)
chr4 (150-200)||(11906904-11906954)
chr4 (146-215)||(51964737-51964809)
chr4 (55-124)||(11906822-11906891)
chr4 (146-182)||(23508519-23508556)
chr4 (146-183)||(55255318-55255355)
chr4 (206-238)||(55255275-55255307)
[»] chr2 (37 HSPs)
chr2 (60-248)||(16096998-16097184)
chr2 (60-250)||(21665627-21665814)
chr2 (137-250)||(38400786-38400899)
chr2 (134-250)||(24035543-24035659)
chr2 (146-238)||(3155217-3155309)
chr2 (146-238)||(10762575-10762667)
chr2 (146-238)||(12337458-12337550)
chr2 (146-238)||(24410437-24410529)
chr2 (135-250)||(12134039-12134154)
chr2 (147-250)||(16227379-16227482)
chr2 (134-238)||(9046029-9046134)
chr2 (146-238)||(26716128-26716221)
chr2 (146-238)||(4505894-4505986)
chr2 (146-238)||(6965007-6965099)
chr2 (146-238)||(29939872-29939964)
chr2 (135-248)||(13800543-13800657)
chr2 (148-237)||(27506752-27506841)
chr2 (134-238)||(8907077-8907181)
chr2 (134-242)||(28425708-28425816)
chr2 (136-217)||(42029166-42029247)
chr2 (146-238)||(3953006-3953098)
chr2 (146-238)||(7162784-7162876)
chr2 (134-247)||(7742131-7742245)
chr2 (136-250)||(11912757-11912871)
chr2 (146-222)||(34693991-34694067)
chr2 (146-222)||(34716403-34716479)
chr2 (169-250)||(37182658-37182739)
chr2 (146-212)||(40636164-40636230)
chr2 (186-250)||(11952656-11952720)
chr2 (164-248)||(22727530-22727614)
chr2 (157-212)||(5952736-5952791)
chr2 (136-182)||(10252472-10252518)
chr2 (134-176)||(22727455-22727497)
chr2 (214-250)||(37622418-37622454)
chr2 (60-121)||(12694794-12694855)
chr2 (136-172)||(11952588-11952624)
chr2 (60-120)||(37182760-37182820)
[»] chr3 (36 HSPs)
chr3 (134-248)||(8420320-8420434)
chr3 (147-248)||(789930-790031)
chr3 (134-238)||(8073336-8073440)
chr3 (134-238)||(21582775-21582879)
chr3 (134-250)||(54574825-54574941)
chr3 (146-238)||(54619213-54619305)
chr3 (146-237)||(37168372-37168463)
chr3 (136-250)||(25855414-25855527)
chr3 (134-238)||(3953894-3953998)
chr3 (136-244)||(32319155-32319263)
chr3 (146-238)||(34290646-34290738)
chr3 (146-238)||(44708481-44708573)
chr3 (146-238)||(47467688-47467780)
chr3 (147-238)||(9878698-9878789)
chr3 (134-250)||(42453403-42453512)
chr3 (148-238)||(50939245-50939335)
chr3 (146-238)||(42098805-42098897)
chr3 (146-238)||(43207248-43207339)
chr3 (146-238)||(53506894-53506986)
chr3 (134-250)||(26279532-26279650)
chr3 (146-236)||(38681103-38681193)
chr3 (146-238)||(27078579-27078671)
chr3 (146-238)||(27084376-27084468)
chr3 (146-250)||(28689371-28689475)
chr3 (136-248)||(49393085-49393195)
chr3 (146-238)||(53149324-53149416)
chr3 (146-230)||(54407168-54407252)
chr3 (51-234)||(36715940-36716123)
chr3 (134-248)||(52374650-52374764)
chr3 (146-234)||(36605973-36606061)
chr3 (146-236)||(18372485-18372579)
chr3 (169-246)||(29598103-29598179)
chr3 (171-238)||(29620423-29620490)
chr3 (134-200)||(23641316-23641382)
chr3 (146-238)||(50258633-50258726)
chr3 (195-238)||(48157143-48157186)
[»] chr6 (21 HSPs)
chr6 (146-250)||(2477594-2477698)
chr6 (147-249)||(21183686-21183788)
chr6 (68-238)||(33774121-33774291)
chr6 (146-238)||(13727409-13727501)
chr6 (146-238)||(19737702-19737794)
chr6 (146-238)||(20711730-20711822)
chr6 (146-238)||(21479498-21479590)
chr6 (146-238)||(24711009-24711101)
chr6 (147-238)||(27788699-27788790)
chr6 (146-238)||(28075787-28075879)
chr6 (146-237)||(21280550-21280641)
chr6 (146-240)||(34397859-34397953)
chr6 (146-234)||(1155859-1155947)
chr6 (146-250)||(6159430-6159534)
chr6 (60-250)||(20611782-20611968)
chr6 (159-250)||(4036940-4037031)
chr6 (146-238)||(30832534-30832626)
chr6 (146-238)||(17353958-17354050)
chr6 (136-221)||(30121783-30121868)
chr6 (146-215)||(27314188-27314258)
chr6 (195-236)||(27994775-27994816)
[»] scaffold0012 (1 HSPs)
scaffold0012 (136-244)||(206489-206597)
[»] scaffold1320 (1 HSPs)
scaffold1320 (134-247)||(1346-1459)
[»] scaffold0097 (1 HSPs)
scaffold0097 (146-250)||(38914-39018)
[»] scaffold0018 (1 HSPs)
scaffold0018 (146-246)||(173520-173620)
[»] scaffold0039 (1 HSPs)
scaffold0039 (134-238)||(106539-106643)
[»] scaffold0182 (1 HSPs)
scaffold0182 (147-250)||(24004-24107)
[»] scaffold0007 (1 HSPs)
scaffold0007 (134-250)||(230857-230973)
[»] scaffold0070 (1 HSPs)
scaffold0070 (146-238)||(1344-1436)
[»] scaffold0022 (2 HSPs)
scaffold0022 (135-248)||(40076-40191)
scaffold0022 (135-248)||(138136-138251)
[»] scaffold0003 (1 HSPs)
scaffold0003 (162-247)||(351360-351445)
[»] scaffold0227 (2 HSPs)
scaffold0227 (190-250)||(16016-16076)
scaffold0227 (146-181)||(16123-16158)
[»] scaffold0001 (2 HSPs)
scaffold0001 (189-238)||(181920-181969)
scaffold0001 (146-178)||(183121-183153)


Alignment Details
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 8103069 - 8102906
Alignment:
Q  82 ggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaattttttaaaagataaatacaaggt 181  Q
    ||||||| |||| |||| |||||||||||||||||||||||||       | ||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  8103069 ggctctgtaaatgaaaagaggcctataataaaataaaaatgtatttttttcttaaaataataatgttatatttaaattttttaaaagataaatacaaggt 8102970  T
Q  182 gcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8102969 gcagtatatatgcggtacacctaaaggtgaaaatcattaccgtatacatgaggaacctcaaacc 8102906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 7944520 - 7944634
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||| |||||||||||||||||| |||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7944520 taaaagaacaatgttttatttaaattttttaaaaaataaatacaaggtgccgtatatatgttgtacacccaaaggtgaaaatcactaccgtatacatgag 7944619  T
Q  234 gaacctcaaaccacc 248  Q
    |||||||||||||||    
T  7944620 gaacctcaaaccacc 7944634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 41677092 - 41677288
Alignment:
Q  54 agggcagttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatt 153  Q
    ||||| |||||||||||| ||||||||||||||||  | | |||| || |||||||||||||||||| |||         |||||||| || ||||||||    
T  41677092 agggcggttcctacgaattcggaggctcggctctgtgagtgaaaagagacctataataaaataaaaacgtatttttttt-taaaagaacaatgttctatt 41677190  T
Q  154 taaatttt-ttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||||||| |||||||||||||||||| ||   |||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41677191 taaatttttttaaaagataaatacaagatgtcgtatatatgcgatacatctaaaggtgaaaatcactactgtatacatgaggaacctcaaaccaccct 41677288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 248
Target Start/End: Original strand, 5973038 - 5973219
Alignment:
Q  65 tacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatttttta 164  Q
    ||||| |||||||||| ||||||| |||| |||| ||| || ||||||||||||||||||         |||||||| || |||||||||||||||||||    
T  5973038 tacgattccggaggcttggctctgtaaatgaaaagaggtctgtaataaaataaaaatgtattcgttt--taaaagaacaatgttctatttaaatttttta 5973135  T
Q  165 aaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    ||||||||||||||||||   ||||||||| ||||||| | || ||||||||| ||||||||||| ||||||||||||||||||    
T  5973136 aaagataaatacaaggtgtcgtatatatgttgtacacccatagatgaaaatcattaccgtatacacgaggaacctcaaaccacc 5973219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 11290289 - 11290175
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||| |||||||||||||||||||||||||||||||||   ||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  11290289 taaaagaacaatgttttatttaaattttttaaaagataaatacaaggtgtcgtatatatgttgtacactcaaaggtgaaaatcactaccgtatacatgag 11290190  T
Q  234 gaacctcaaaccacc 248  Q
     ||||||||||||||    
T  11290189 caacctcaaaccacc 11290175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 39332405 - 39332519
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || ||||||||||| ||||| |||||||||||||||||||  ||||||| | |||||| | ||||||||||||||||||||||||||||||||    
T  39332405 aaagaacaatgttctatttaattttttaaaaagataaatacaaggtgtcatatataagcggtacatccaaaggtgaaaatcactaccgtatacatgagga 39332504  T
Q  236 acctcaaaccaccct 250  Q
    |||||||||||||||    
T  39332505 acctcaaaccaccct 39332519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 15078863 - 15078750
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    ||||||||||| |||||||||||| ||||||||||||||||| |||||||  ||||||||   |||||| ||| ||||||||||||| ||||||||||||    
T  15078863 taaaagaataatgttctatttaaaatttttaaaagataaatataaggtgctgtatatatgctatacacccaaatgtgaaaatcactatcgtatacatgag 15078764  T
Q  234 gaacctcaaaccac 247  Q
    ||||||||||||||    
T  15078763 gaacctcaaaccac 15078750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 5721652 - 5721548
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||   |||||||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  5721652 gttctatttaatttttttaaaagataaatacaaggtgccctatataatcggtacacccaaaagtgaaaatcactaccgtatacctgaggaacctcaaacc 5721553  T
Q  246 accct 250  Q
    |||||    
T  5721552 accct 5721548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 15167413 - 15167529
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||||||||||||||||||||||||||||| || |||   |||||||| | |||||| ||| ||||||||||||| ||||||||||||    
T  15167413 taaaagaacaatgttctatttaaattttttaaaagataaatataaagtgttgtatatatgcgatacacccaaatgtgaaaatcactatcgtatacatgag 15167512  T
Q  234 gaacctcaaaccaccct 250  Q
    |||||||||||||||||    
T  15167513 gaacctcaaaccaccct 15167529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 42600873 - 42600783
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| ||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  42600873 tctatttatattttttaaaagataaatataaggtgccgtatatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 42600783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 5942777 - 5942685
Alignment:
Q  158 ttttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||||||||||||||||||||| ||   ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5942777 ttttttaaaagataaatacaagatgtcgtatatgtgcggtacacccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 5942685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 45475910 - 45475818
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  45475910 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccataggtgaaaatgactaccgtatacatgaggaacc 45475818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 25561496 - 25561607
Alignment:
Q  137 aagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaa 236  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||||  |||||||| | || ||| ||| |||||||||||| ||||||||||||||||    
T  25561496 aagaataatgttctatttaaatcttttaaa-gataaatacaaggtgccgtatatatgcgata-acccaaatgtgaaaatcactgccgtatacatgaggaa 25561593  T
Q  237 cctcaaaccaccct 250  Q
    ||||||||||||||    
T  25561594 cctcaaaccaccct 25561607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 23606639 - 23606731
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||| ||||| ||||||||||||||||||||||    
T  23606639 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtaaaaatgactaccgtatacatgaggaacc 23606731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 23798271 - 23798363
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| ||| |||||||| ||||||||||||||||||||||    
T  23798271 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacc 23798363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 30883422 - 30883330
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||| ||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  30883422 gttctatttatattttttaaaagataaatacaatgtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 30883330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 37430168 - 37430260
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| | |||||||| |||| ||||| ||||||||||||||||||||||    
T  37430168 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcgttacacctagaggtaaaaatgactaccgtatacatgaggaacc 37430260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 10917482 - 10917392
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| |||||| |||||||||||||||    
T  10917482 tctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccttatacatgaggaacc 10917392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 34789872 - 34789974
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    ||||||||||||| | |||||||||||||||||| ||   ||||||||| ||||||| |||||||||||||||||||||||||||||| ||  |||||||    
T  34789872 gttctatttaaatctcttaaaagataaatacaagatgtcgtatatatgttgtacacccaaaggtgaaaatcactaccgtatacatgagaaatatcaaacc 34789971  T
Q  246 acc 248  Q
    |||    
T  34789972 acc 34789974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 3048530 - 3048619
Alignment:
Q  149 ctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    ||||||| |||||||||||||||||||||||||||  |||||||| |||||||||| || ||||||| ||||||||||||| ||||||||    
T  3048530 ctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacctagagatgaaaatgactaccgtatacacgaggaacc 3048619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 2952231 - 2952323
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||| ||||  |||||||| |||||||| | || ||||||| ||||||||||||||||||||||    
T  2952231 gttctatttatattttttaaaagataaatacaaagtgccgtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacc 2952323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 5860754 - 5860846
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| |||||| |||||||||| ||||    
T  5860754 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccatatacatgagaaacc 5860846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 13534697 - 13534788
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||| |||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  13534697 gttctatttatattttttaaaagataaatacaag-tgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 13534788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 13624237 - 13624328
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||| |||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  13624237 gttctatttatattttttaaaagataaatacaag-tgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 13624328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 41879286 - 41879182
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||||||||| ||||||||||||||||||||||||| |  |||||||| |||||| | |||||||||||| ||||||| |||||||||    
T  41879286 taaaagaacaatgttctatttatattttttaaaagataaatacaaggtaccgtatatatgcggtacatccaaaggtgaaaatgactaccgaatacatgag 41879187  T
Q  234 gaacc 238  Q
     ||||    
T  41879186 aaacc 41879182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 34048634 - 34048821
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatt 159  Q
    ||||||||||||  ||||||||||||||| || | ||||||| ||  |||||||||||||||||          | |||||| || ||||||||||||      
T  34048634 gttcctacgaatttggaggctcggctctgtaagtgaaaatagacccgtaataaaataaaaatgtttttt-----ttaaagaacaatgttctatttaaaca 34048728  T
Q  160 ttttaaaagataaatacaaggtgca--atatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    ||||||||||||||||||| |||    |||||||| || |||||| |||| ||||||||||||| ||||||||||||| ||||| ||||||||    
T  34048729 ttttaaaagataaatacaatgtgtcgtatatatatatgatacacccaaagatgaaaatcactactgtatacatgaggatcctcataccaccct 34048821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 23941105 - 23941205
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccc 249  Q
    |||||||||||||||||||||||||||||||||  ||||||| | | |||||| |||| |||||||||| | | |||| | |||||||||||||||||||    
T  23941105 tatttaaattttttaaaagataaatacaaggtgtcatatataagcgatacacccaaagatgaaaatcacaatcatatatacgaggaacctcaaaccaccc 23941204  T
Q  250 t 250  Q
    |    
T  23941205 t 23941205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 8646310 - 8646201
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||    ||||||||   |||||  ||| ||||||||||||||||||||||| ||    
T  8646310 taaaagaacaatgttctatttaaattttttaaaagataaatacaaggtatcgtatatatg-catacacgcaaatgtgaaaatcactaccgtatacataag 8646212  T
Q  234 gaacctcaaac 244  Q
     ||||||||||    
T  8646211 aaacctcaaac 8646201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 14509983 - 14510094
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaa-tcactaccgtatacatgagg 234  Q
    |||||| || |||| ||||||||||||||||||| ||||| ||||||   |||||| |  ||||||| ||| ||||||| |||||||||||||||||||     
T  14509983 aaagaacaatgttcaatttaaattttttaaaagacaaatataaggtgtcgtatatacg--gtacacccaaatgtgaaaaatcactaccgtatacatgagt 14510080  T
Q  235 aacctcaaaccacc 248  Q
    ||||||||||||||    
T  14510081 aacctcaaaccacc 14510094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 34868177 - 34868223
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtg 182  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  34868177 aaagaataatgttctatttaaattttttaaaagataaatacaaggtg 34868223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 30674330 - 30674485
Alignment:
Q  61 ttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaattt 160  Q
    |||||||||||| ||||||||||||||| || | |||| ||||   |||||||||||||| |||         | |||||| || ||||||||||||| |    
T  30674330 ttcctacgaatctggaggctcggctctgtaagtgaaaagaggctcgtaataaaataaaaacgtattttttt--ttaaagaacaatgttctatttaaatgt 30674427  T
Q  161 tttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcac 218  Q
    ||||||||||||||| ||||||   |||||||| | |||||  |||||||||||||||    
T  30674428 tttaaaagataaatataaggtgtcgtatatatgcgatacactcaaaggtgaaaatcac 30674485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 9108596 - 9108551
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggt 181  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  9108596 aaagaacaatgttctatttaaattttttaaaagataaatacaaggt 9108551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 38009150 - 38009191
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaata 175  Q
    |||||||| || |||||||||||| |||||||||||||||||    
T  38009150 taaaagaacaatgttctatttaaaatttttaaaagataaata 38009191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 14509906 - 14509970
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgta 124  Q
    ||||||||||||  ||||  |||| ||||||| | ||||||||||  ||||||||||||||||||    
T  14509906 gttcctacgaatttggagattcggttctgcaagtgaaaataggcccgtaataaaataaaaatgta 14509970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 7398557 - 7398440
Alignment:
Q  133 ataaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatga 232  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  7398557 ataaaagaacaatgttctatttaaattttttgaaagataaatacaaggtgccatatatatgtgatacacctaaaggtgaaaatcactaccatatacatga 7398458  T
Q  233 ggaacctcaaaccaccct 250  Q
    ||||||||||||||||||    
T  7398457 ggaacctcaaaccaccct 7398440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 27237420 - 27237536
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||   |||||||||| |  | ||||||||||||||||||| ||||||||||||    
T  27237420 taaaagaacaatgttctatttaaattttttaaaagataaatacaaggtgttgtatatatgtgatgaatctaaaggtgaaaatcactatcgtatacatgag 27237519  T
Q  234 gaacctcaaaccaccct 250  Q
    |||||||||||||||||    
T  27237520 gaacctcaaaccaccct 27237536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 244
Target Start/End: Original strand, 2611186 - 2611369
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatt 159  Q
    ||||||| |||||||||||||||| ||||||| | |||| |||| | |||||||||||||| |||         |||||||| || ||||||||||||||    
T  2611186 gttcctatgaatccggaggctcggttctgcaagtgaaaagaggcttgtaataaaataaaaaagtatttttttt-taaaagaacaatgttctatttaaatt 2611284  T
Q  160 ttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaac 244  Q
    |||||||||||||||||||||||   |||||||| |||||||  || |||||||||||| || ||||||||||||||||||||||    
T  2611285 ttttaaaagataaatacaaggtgtcgtatatatgcggtacacacaatggtgaaaatcacaactgtatacatgaggaacctcaaac 2611369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 9021812 - 9021912
Alignment:
Q  149 ctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    |||||||||||||||||||||||||||||| ||||  |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  9021812 ctatttaaattttttaaaagataaatacaatgtgccgtatatatgcggtacacccaaaggtgaaaatcactaccgtatacatgagg-acctcaaaccacc 9021910  T
Q  249 ct 250  Q
    ||    
T  9021911 ct 9021912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 12981432 - 12981315
Alignment:
Q  133 ataaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatga 232  Q
    ||||||||| || ||||||||||| |||||||||||||||||||||||| | ||||||| | |||||||  |||||||||||||||||| ||||| ||||    
T  12981432 ataaaagaagaatgttctatttaatttttttaaaagataaatacaaggttccatatatacgcggtacacacaaaggtgaaaatcactactgtatatatga 12981333  T
Q  233 ggaacctcaaaccaccct 250  Q
    ||||||||||||||||||    
T  12981332 ggaacctcaaaccaccct 12981315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 18201228 - 18201126
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccac 247  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||| || |||||||||||||||||||||    
T  18201228 tctatttaaattttttaaaatataaatacaagatgccatatatatgtggtacacctaagggtgaaaatcgttaccttacacatgaggaacctcaaaccac 18201129  T
Q  248 cct 250  Q
    |||    
T  18201128 cct 18201126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 250
Target Start/End: Complemental strand, 23859250 - 23859062
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatt 159  Q
    ||||||||||||  ||||||||| ||||| || | |||| || ||| |||||||||||||| |||         ||| ||||||| ||||||||||||||    
T  23859250 gttcctacgaatttggaggctcgactctgtaagtgaaaagagacctgtaataaaataaaaacgtattttgtt--taagagaataatgttctatttaaatt 23859153  T
Q  160 ttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    ||||||||||||||||||| || |  |||||||| | |||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  23859152 ttttaaaagataaatacaatgtaccgtatatatgcgatacacccaaagatgaaaattactaccgtatacatgaggatcctcaaaccaccct 23859062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 12419413 - 12419608
Alignment:
Q  53 cagggcagttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctat 152  Q
    |||||| ||||||| |||||||||||||||||| || || | |||| |||||  ||||||||||| || |||         |||||||| || |||||||    
T  12419413 cagggccgttcctatgaatccggaggctcggctttgtaagtgaaaagaggcccgtaataaaataacaacgtattttttt--taaaagaacaatgttctat 12419510  T
Q  153 ttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||||||||||||||||||||||||| || |  ||||| |||| |||| | |||| ||||||||||||  | ||||||||||||||||||||||||||    
T  12419511 ttaaattttttaaaagataaatacaatgtaccttatatgtgtgatacatccaaagatgaaaatcactattgaatacatgaggaacctcaaaccaccct 12419608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 19692187 - 19692095
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||  |||||||||||||||||    
T  19692187 gttctatttatattttttaaaagataaatataaggtgccatatatatgcggtacacctaaaggtgaaaatgactttcgtatacatgaggaacc 19692095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 36891683 - 36891571
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    ||||||||||| |||||||||| |||||||||| ||| ||||||| |||   |||||||  |||||| | ||||||||||||||||||||||||||||||    
T  36891683 taaaagaataatgttctatttatattttttaaatgatgaatacaatgtgttgtatatattcggtacatccaaaggtgaaaatcactaccgtatacatgag 36891584  T
Q  234 gaacctcaaacca 246  Q
    |||||||||||||    
T  36891583 gaacctcaaacca 36891571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 6765680 - 6765794
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || |||||||||||||||||||||||||||||||||||||   |||||| |  ||||| | |||||||||||||||||||||||| | ||| |    
T  6765680 aaagaacaatgttctatttaaattttttaaaagataaatacaaggtgtcgtatataagccgtacatccaaaggtgaaaatcactaccgtatataagagta 6765779  T
Q  236 acctcaaaccaccct 250  Q
    |||||||||||||||    
T  6765780 acctcaaaccaccct 6765794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 20091292 - 20091382
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  20091292 tctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 20091382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 8171548 - 8171640
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | || ||||||| ||||||||||||||||||||||    
T  8171548 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacc 8171640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 12596296 - 12596388
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||| | |||||||||| |||||||||| |||||||||||    
T  12596296 gttctatttatatttttttaaagataaatacaaggtgccgtatatatgtggtacacccagaggtgaaaatgactaccgtatgcatgaggaacc 12596388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 29077313 - 29077221
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  29077313 gttctatttatattttttaaaagataaatacaaggtgtcgtatatatgcggtacaccaagaggtgaaaatgactaccgtatacatgaggaacc 29077221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 38414882 - 38414977
Alignment:
Q  143 aacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    ||||||||||||  ||||||||||||||||||| ||||||   ||||||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  38414882 aacgttctatttgtattttttaaaagataaatataaggtgacgtatatatgtggtacacccaaaggtgaaaatgactactgtatacatgaggaacc 38414977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 36902924 - 36903022
Alignment:
Q  137 aagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    ||||| || |||||||||||||||||||| ||||||||||||| ||   ||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  36902924 aagaacaatgttctatttaaattttttaatagataaatacaagatgtcgtatatatgttgtacacctaaaggtgaaaatcagtactgtatacatgagga 36903022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 48983855 - 48983945
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| ||||||||||||||||||| ||||||   |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  48983855 tctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaataactaccgtatacatgaggaacc 48983945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 10955577 - 10955485
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||  | |||||||||| ||||||||||||||||||||||    
T  10955577 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacactcagaggtgaaaatgactaccgtatacatgaggaacc 10955485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 18776775 - 18776867
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | | |||||||| ||||||||||||||||| ||||    
T  18776775 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagatgtgaaaatgactaccgtatacatgagaaacc 18776867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 23744900 - 23744808
Alignment:
Q  135 aaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtata 227  Q
    ||||||| || |||||| |||||||||||||||||||||||||||||||   ||||||| ||||||||||||| | |||||||||||||||||    
T  23744900 aaaagaacaatgttctaattaaattttttaaaagataaatacaaggtgccgcatatatgcggtacacctaaagataaaaatcactaccgtata 23744808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 24525694 - 24525786
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  | |||||| |||||||| ||| |||||||| ||||||||||||||||||||||    
T  24525694 gttctatttatattttttaaaagataaatataaggtgccgtgtatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacc 24525786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 8239792 - 8239688
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    ||||||| ||| |||||||||| ||||||||||| ||||||| || ||||  ||||||||||||||||| ||| |||||||| | ||||||||| |||||    
T  8239792 taaaagagtaatgttctatttatattttttaaaaaataaatataatgtgccgtatatatgtggtacacccaaatgtgaaaatgattaccgtatatatgag 8239693  T
Q  234 gaacc 238  Q
    |||||    
T  8239692 gaacc 8239688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 10329419 - 10329511
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| || | ||| |||||||||||| ||||||||||||||||| ||||    
T  10329419 gttctatttatattttttaaaagataaatataaggtgccgtatatatgaggaaaacccaaaggtgaaaatgactaccgtatacatgagaaacc 10329511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 20153290 - 20153190
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccc 249  Q
    ||||||||||||||||||||||||||||| |||   |||||||| | || ||| |||| ||||||||||| |||||||||||||| | ||||||||||||    
T  20153290 tatttaaattttttaaaagataaatacaaagtgttgtatatatgcgataaacccaaagatgaaaatcactgccgtatacatgagggatctcaaaccaccc 20153191  T
Q  250 t 250  Q
    |    
T  20153190 t 20153190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 33162350 - 33162417
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaat 215  Q
    |||||||| |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||    
T  33162350 tctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacctaaaggtgaaaat 33162417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 47984978 - 47985071
Alignment:
Q  146 gttctatttaaatttt-ttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||| |||||||| ||||| |||||||  |||||||| |||||||| |||||||||||| || |||||||||||||||||||    
T  47984978 gttctatttatatttttttaaaagaaaaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgaccaccgtatacatgaggaacc 47985071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 23551092 - 23551172
Alignment:
Q  158 ttttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||||||||||| ||||||   |||||||| |||||| | |||||||||||| ||||||||||||||||||||||    
T  23551092 ttttttaaaagataaatataaggtgtcgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacc 23551172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 38971341 - 38971255
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaac 237  Q
    ||||||||||||| |||||||||||||||||||   |||||||||  |||||||||| |||||||||||||||||| ||| |||||||    
T  38971341 tatttaaattttt-aaaagataaatacaaggtgtcgtatatatgttatacacctaaatgtgaaaatcactaccgtaaacacgaggaac 38971255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 23020481 - 23020589
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| ||||||  ||||| ||||||||||||||||||| ||||||   ||||||||    ||||  ||||||||||||||||||||||||||||||    
T  23020481 taaaagaacaacgtttcatttagattttttaaaagataaatataaggtgttgtatatatgcac-acactcaaaggtgaaaatcactaccgtatacatgag 23020579  T
Q  234 gaacctcaaa 243  Q
    |||| |||||    
T  23020580 gaacttcaaa 23020589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 26254086 - 26254017
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaat 215  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| |||| |||||||    
T  26254086 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccaaagatgaaaat 26254017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 28749801 - 28749715
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagg 234  Q
    ||||||||| |||||| ||||||||||||||||||||  |||||||| |||||||  | | |||||||| ||||||||||||||||||    
T  28749801 ttctatttatatttttgaaaagataaatacaaggtgccgtatatatgcggtacactcagatgtgaaaat-actaccgtatacatgagg 28749715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 9014782 - 9014875
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccc 249  Q
    |||||||||||| |||||||||||||||| |||   |||||||       ||| |||||||||||||||||||||||||||||| ||||||||| |||||    
T  9014782 tatttaaattttgtaaaagataaatacaatgtgtcgtatatat-------acccaaaggtgaaaatcactaccgtatacatgagtaacctcaaatcaccc 9014874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 21763596 - 21763672
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactacc 222  Q
    ||||||||||||||||||||||||||||||||| ||    |||||||| | |||||| ||| |||||||||||||||    
T  21763596 gttctatttaaattttttaaaagataaatacaaagtatcgtatatatgcgatacaccaaaaagtgaaaatcactacc 21763672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 17800270 - 17800332
Alignment:
Q  186 tatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    ||||||||| ||||||| ||| ||||||||||||||||||| |||||||||  ||||||||||    
T  17800270 tatatatgttgtacacccaaaagtgaaaatcactaccgtatgcatgaggaatttcaaaccacc 17800332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 25010477 - 25010434
Alignment:
Q  195 ggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  25010477 ggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 25010434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 9014177 - 9014219
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaa 178  Q
    |||||| || ||| |||||||||||||||||||||||||||||    
T  9014177 aaagaacaatgttttatttaaattttttaaaagataaatacaa 9014219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 18201319 - 18201281
Alignment:
Q  53 cagggcagttcctacgaatccggaggctcggctctgcaa 91  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  18201319 cagggccgttcccacgaatccggaggctcggctctgcaa 18201281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 26917728 - 26917788
Alignment:
Q  158 ttttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcac 218  Q
    |||||||||||| ||||||||| ||   |||||||||| |||| ||||| |||||||||||    
T  26917728 ttttttaaaagaaaaatacaagatgacgtatatatgtgatacatctaaatgtgaaaatcac 26917788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 193 - 372
Alignment:
Q  69 aatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaattttttaaaag 168  Q
    ||||| ||||||||||||||||| | || | ||||| |||||||||||||||||||         |||||||| || |||||||||||||||||||||||    
T  193 aatccagaggctcggctctgcaagtgaatagaggcccataataaaataaaaatgtatttttat--taaaagaacaatgttctatttaaattttttaaaag 290  T
Q  169 ataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    ||||||||||||||   |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  291 ataaatacaaggtgtcgtatatatgcggtacacccaaatgtgaaaatcactaccgtatacatgatgaacctcaaaccaccct 372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 60 - 248
Target Start/End: Complemental strand, 45758684 - 45758496
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatt 159  Q
    |||||||||||||| |||||||||||||| || | |||| ||| |   |||||||||||||||||         |||||||| || ||||||||||||||    
T  45758684 gttcctacgaatccagaggctcggctctgtaagtgaaaagaggtccgaaataaaataaaaatgtatattttttttaaaagaacaatgttctatttaaatt 45758585  T
Q  160 ttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    ||||||||||||||| |||||||   |||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  45758584 ttttaaaagataaatgcaaggtgttgtatatatgttatacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 45758496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 38547045 - 38547149
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||    
T  38547045 gttctatttaaattttttaaaagataaatacaaggtgccgtatatatgtggtacacccaaatgtgaaaatcactatcatatacatgaggaacctcaaacc 38547144  T
Q  246 accct 250  Q
    |||||    
T  38547145 accct 38547149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 39134637 - 39134836
Alignment:
Q  52 acagggcagttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttcta 151  Q
    ||||||| ||||||||||||||||||||||||||| | || | |||| || |   |||||||||||||| |||         |||||||| || ||||||    
T  39134637 acagggccgttcctacgaatccggaggctcggctccgtaagtgaaaagagactcgtaataaaataaaaacgtattttttttttaaaagaacaatgttcta 39134736  T
Q  152 tttaaattttttaaaa-gataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||||||||||||||| ||||||||||||||||  ||||||||   |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  39134737 tttaaattttttaaaaagataaatacaaggtgctgtatatatgcaatacacccaaaggtgataatcactactgtatacatgaggaacctcaaaccaccct 39134836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 5316784 - 5316692
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  5316784 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 5316692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 23185531 - 23185439
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  23185531 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccataggtgaaaatgactaccgtatacatgaggaacc 23185439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 6771895 - 6771801
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctc 240  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||| ||||||||||    
T  6771895 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacacgaggaacctc 6771801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 16140159 - 16140069
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaa 236  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||| |||||||||| |||||||||| ||||||||||||||||||||    
T  16140159 gttctatttatattttttaaaagataaatacaaggtgttgtatatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaa 16140069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 64 - 248
Target Start/End: Complemental strand, 5533496 - 5533314
Alignment:
Q  64 ctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatttttt 163  Q
    ||||||||||||||||| | ||||| || | |||| || ||  ||||||||||||||||||         |||||||| ||  |||||||||||||||||    
T  5533496 ctacgaatccggaggcttgactctgtaagtgaaaagagacccgtaataaaataaaaatgtatttttt---taaaagaacaatattctatttaaatttttt 5533400  T
Q  164 -aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
     |||||||||| |||||||||  ||||||||  |||||   ||||||||||||||||||||||||||||||||| |||||||||||    
T  5533399 taaaagataaacacaaggtgccgtatatatgatgtacaatcaaaggtgaaaatcactaccgtatacatgaggaaactcaaaccacc 5533314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 9173032 - 9173124
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||| | |||||||||||| ||||||||||||||||||||||    
T  9173032 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacc 9173124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 9181014 - 9181106
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||| | |||||||||||| ||||||||||||||||||||||    
T  9181014 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacc 9181106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 14146404 - 14146312
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | || ||||||| ||||||||||||||||||||||    
T  14146404 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacc 14146312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 27559741 - 27559649
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  27559741 gttctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 27559649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 38853626 - 38853527
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    ||||||||||||||||||||| |||||||||||||||   ||||||||| ||| | | ||||||||||||||||||||||||||||| ||||||||||||    
T  38853626 gttctatttaaattttttaaatgataaatacaaggtgtcgtatatatgttgtatatccaaaggtgaaaatcactaccgtatacatga-gaacctcaaacc 38853528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 43235767 - 43235881
Alignment:
Q  136 aaagaataacgttctatttaaatttttta--aaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||| || ||||||||||||||||||   ||||||||||||||| ||   ||||||||  ||||||| ||||||||||||||||| ||||||||||||    
T  43235767 aaagaaaaatgttctatttaaatttttttttaaagataaatacaagatgtcgtatatatgatgtacacccaaaggtgaaaatcactatcgtatacatgag 43235866  T
Q  234 gaacctcaaaccacc 248  Q
    |||||||||||||||    
T  43235867 gaacctcaaaccacc 43235881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 26804045 - 26803948
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccc 249  Q
    |||||||||||||||||||||||||||||| ||   |||||||| | |||||   ||||||||||||||||||||||||||||| |||||||||||||||    
T  26804045 tatttaaattttttaaaagataaatacaagatgtcgtatatatgcgatacac---aaggtgaaaatcactaccgtatacatgagaaacctcaaaccaccc 26803949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 50881534 - 50881440
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctc 240  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||| |||||| ||| |||||||||| ||||| ||||||||||||||||||    
T  50881534 gttctatttatattttttaaaagataaatacaaggtgtcgtatatatgcggtacatctagaggtgaaaatgactacagtatacatgaggaacctc 50881440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 1366887 - 1366979
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||| ||||||| ||||||||||||| ||||||||    
T  1366887 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaagatgaaaatgactaccgtatacacgaggaacc 1366979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 4971627 - 4971719
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||||| |  |||||||| |||||||| | | |||||||| ||||||||||||||||||||||    
T  4971627 gttctatttatattttttaaaagataaatacaaggtaccgtatatatgcggtacacccataagtgaaaatgactaccgtatacatgaggaacc 4971719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 5027653 - 5027561
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| |||||| |||| ||||||||||    
T  5027653 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccataggtgaaaatgactaccatatagatgaggaacc 5027561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 17169060 - 17168968
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||| |||||||| |||||||||||| |||||| |||||||||||||||    
T  17169060 gttctatttatattttttaaaagataaatataaggtgttgtatatatgcggtacacccaaaggtgaaaatgactaccatatacatgaggaacc 17168968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 33170859 - 33170759
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccc 249  Q
    ||||||||||||||||||  ||||||||| |||   |||||||| |||||||| || ||||||||||||||||||||||||||| ||||| |||||||||    
T  33170859 tatttaaattttttaaaacgtaaatacaatgtgttgtatatatgcggtacaccaaatggtgaaaatcactaccgtatacatgagaaaccttaaaccaccc 33170760  T
Q  250 t 250  Q
    |    
T  33170759 t 33170759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 44655845 - 44655753
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||| |||||||| | |||| ||||| ||||||||||||||||||||||    
T  44655845 gttctatttatattttttaaaagataaatacaaggtgtcgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacc 44655753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 6221791 - 6221678
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || ||||||||||||||||| ||||||||||||||| ||||  |||||| | |||||| | ||| |||||||||| || |||||| |||||||    
T  6221791 aaagaacaatgttctatttaaattttt-aaaagataaatacaatgtgccgtatataagcggtacatcaaaatgtgaaaatcattatcgtatatatgagga 6221693  T
Q  236 acctcaaaccaccct 250  Q
    |||||||||||||||    
T  6221692 acctcaaaccaccct 6221678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 19955819 - 19955729
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| ||||||||||||||||||| ||||| |  |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||    
T  19955819 tctatttatattttttaaaagataaatataaggtaccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacc 19955729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 3406522 - 3406430
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||  ||||||    |||||||||| ||||||||||||||||||||||    
T  3406522 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcagtacactcggaggtgaaaatgactaccgtatacatgaggaacc 3406430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 3440298 - 3440390
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||  ||||||    |||||||||| ||||||||||||||||||||||    
T  3440298 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcagtacactcggaggtgaaaatgactaccgtatacatgaggaacc 3440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 40501801 - 40501893
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctc 240  Q
    |||||||| ||||||||||||||||||| ||||||   |||||||| |||||||| |||||| ||||| |||||||||||||||| |||||||    
T  40501801 tctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtaaaaatgactaccgtatacatgaagaacctc 40501893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 50146412 - 50146307
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||||||||||| ||||| |||||||||| ||||||||  | |||||||| || ||| |||||| ||||||| |||| ||||||||||    
T  50146412 taaaagaacaatgttctatttaaactttttgaaagataaatgcaaggtgccgtgtatatgtgatagacccaaaggtaaaaatcattaccctatacatgag 50146313  T
Q  234 gaacct 239  Q
    ||||||    
T  50146312 gaacct 50146307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 51607452 - 51607540
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtg-caatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaac 237  Q
    |||||| ||||||||||||||||||| |||||| |  |||||||| |||||||| ||| |||||||| |||||||||||||||||||||    
T  51607452 tatttatattttttaaaagataaatataaggtggccgtatatatgcggtacacccaaacgtgaaaatgactaccgtatacatgaggaac 51607540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 35392385 - 35392295
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgta 225  Q
    ||||||||||| ||| ||||||||||||||||  ||||||||||||||||  |||||||| |||| | | ||||||||||||||||||||||    
T  35392385 taaaagaataatgttttatttaaattttttaag-gataaatacaaggtgccgtatatatgcggtatatccaaaggtgaaaatcactaccgta 35392295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 10925950 - 10926067
Alignment:
Q  134 taaaagaataacgttctatttaaat-tttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatga 232  Q
    |||||||| ||  |||||||||| | ||||||||| |||||||||| ||||  |||||||| | | || | |||| ||||||||||||||||||||||||    
T  10925950 taaaagaacaatattctatttaagtatttttaaaaaataaatacaatgtgccgtatatatgagatgcatccaaagatgaaaatcactaccgtatacatga 10926049  T
Q  233 ggaacctcaaaccaccct 250  Q
    ||| ||||||| ||||||    
T  10926050 ggatcctcaaatcaccct 10926067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 13913491 - 13913583
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaa--tatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| ||||||||||||||||||| ||| |||    |||||||| |||||||||||| |||||||| ||||||||||||||||| ||||    
T  13913491 tctatttatattttttaaaagataaatataagttgccgggtatatatgcggtacacctaaaagtgaaaatgactaccgtatacatgagaaacc 13913583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 21740946 - 21741029
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtataca 229  Q
    |||||||||  |||||||||||||||||||||||||||  |||||||| | |||||| | |||||||||| |||||| ||||||    
T  21740946 gttctatttgtattttttaaaagataaatacaaggtgccgtatatatgcgatacacccagaggtgaaaatgactaccatataca 21741029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 41697146 - 41697238
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||| ||    ||||||||  ||||| | | | |||||||| ||||||||||||||||||||||    
T  41697146 gttctatttatattttttaaaagataaatacaaagtatcgtatatatgcagtacatccagaagtgaaaatgactaccgtatacatgaggaacc 41697238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 22865470 - 22865538
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaat 215  Q
    |||||||||| ||||||||||||||||||||||| |||  |||||||  |||||||| ||||||||||||    
T  22865470 gttctatttatattttttaaaagataaatacaagatgctctatatat-cggtacacccaaaggtgaaaat 22865538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 44895709 - 44895664
Alignment:
Q  193 gtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||    
T  44895709 gtggtacacccaaaggtgaaaatgattaccgtatacatgaggaacc 44895664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 24183785 - 24183834
Alignment:
Q  74 ggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgta 124  Q
    |||||||||||||| |||  |||||||||||| ||||||||||||||||||    
T  24183785 ggaggctcggctct-caatcaaaaataggcctctaataaaataaaaatgta 24183834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 6889715 - 6889646
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaat 215  Q
    |||||||||| |||||||||||||||||||||| ||    |||||||| |||||| | | ||||||||||    
T  6889715 gttctatttatattttttaaaagataaatacaaagtatcgtatatatgcggtacatccagaggtgaaaat 6889646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 6891561 - 6891492
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaat 215  Q
    |||||||||| |||||||||||||||||||||| ||    |||||||| |||||| | | ||||||||||    
T  6891561 gttctatttatattttttaaaagataaatacaaagtatcgtatatatgcggtacatccagaggtgaaaat 6891492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 27906738 - 27906775
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgc 183  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  27906738 gttccatttatattttttaaaagataaatacaaggtgc 27906775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 17322620 - 17322664
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaa 178  Q
    |||||||| || |||||||||| ||||||| ||||||||||||||    
T  17322620 taaaagaacaatgttctatttatatttttttaaagataaatacaa 17322664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 27906786 - 27906818
Alignment:
Q  206 aggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||    
T  27906786 aggtgaaaatgactaccgtatacatgaggaacc 27906818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 34426008 - 34425892
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||  |||||||||| ||||||||||| | ||||||| |||||||||||||||    
T  34426008 taaaagaacaatgttctatttcaattttttaaaagataaatacaaggtgccgtatatatgtgatacacctaaagattaaaatcattaccgtatacatgag 34425909  T
Q  234 gaacctcaaaccaccct 250  Q
    |||||||||||||||||    
T  34425908 gaacctcaaaccaccct 34425892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 36868871 - 36868987
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||||| |||||||||||||||||||||||||   ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  36868871 taaaagaacaatgttctatttaatttttttaaaagataaatacaaggtgtcgtatatatgtggtacacccaaatgtgaaaatcactaccgtatacatgag 36868970  T
Q  234 gaacctcaaaccaccct 250  Q
    ||| |||||||||||||    
T  36868971 gaatctcaaaccaccct 36868987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 14318382 - 14318496
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || |||||||||||||||||||||||||||||||||||||   |||||||||| |||| | |||  |||||||||||||||||||||||||||    
T  14318382 aaagaacaatgttctatttaaattttttaaaagataaatacaaggtgtcgtatatatgtgatacatccaaaaatgaaaatcactaccgtatacatgagga 14318481  T
Q  236 acctcaaaccaccct 250  Q
    |||||||||||||||    
T  14318482 acctcaaaccaccct 14318496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 33037958 - 33037771
Alignment:
Q  61 ttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaattt 160  Q
    ||||||||||| | |||||||||||||| ||   |||| ||||   ||||||||||||||||||         |||||||| || ||| |||||||||||    
T  33037958 ttcctacgaattcagaggctcggctctgtaaccgaaaagaggctcgtaataaaataaaaatgtatatattttttaaaagaacaatgttttatttaaattt 33037859  T
Q  161 tttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    ||||||||||||||||||| |    ||||||||| ||||||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  33037858 tttaaaagataaatacaagatatcgtatatatgttgtacacccaaaggtgaaaaccattaccgtatacatgaggaacctcaaaccacc 33037771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 1366521 - 1366637
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||||||||||||| |||||||||||||| ||   |||||||| | |||||||||| |||||||||||||||||||| |||||    
T  1366521 taaaagaacaatgttctatttaaattttttataagataaatacaagatgtggtatatatgcgatacacctaaatgtgaaaatcactaccgtatatatgag 1366620  T
Q  234 gaacctcaaaccaccct 250  Q
    |||||||| ||||||||    
T  1366621 gaacctcataccaccct 1366637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 2024637 - 2024749
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||||||||||||||||| |||||||||||||| ||||  |||||||||| |||||| |||| |||||||||||||| ||||||||||    
T  2024637 taaaagaacaatgttctatttaaatttttttaaagataaatacaatgtgccgtatatatgtgatacacccaaagatgaaaatcactaccatatacatgag 2024736  T
Q  234 gaacctcaaacca 246  Q
    || ||||||||||    
T  2024737 gatcctcaaacca 2024749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 27079104 - 27079012
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||    
T  27079104 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacctaaaggtgaaaatgactactgtatacatgaggaacc 27079012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 2530823 - 2531008
Alignment:
Q  62 tcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatttt 161  Q
    ||||||||||| | ||| | ||||||| || | |||| |||||  ||||||||||||||||||       | |||||||| || ||||||||||| ||||    
T  2530823 tcctacgaatctgaaggtttggctctgtaagtgaaaagaggcccgtaataaaataaaaatgtattttt--cttaaaagaa-aatgttctatttaagtttt 2530919  T
Q  162 ttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    ||||||||||||||||| |||   |||||||  |||||| | |||||||||||||||||| ||||||||||||||||||||||||||||    
T  2530920 ttaaaagataaatacaatgtgtcgtatatatacggtacatccaaaggtgaaaatcactactgtatacatgaggaacctcaaaccaccct 2531008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 11242242 - 11242429
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatt 159  Q
    ||||||| ||||||||||||||||||||| || | |||| || |   |||||||||||||| |||         |||||||| || ||||||||||| ||    
T  11242242 gttcctatgaatccggaggctcggctctgtaagtgaaaagagactcgtaataaaataaaaacgtattcttt---taaaagaacaatgttctatttaattt 11242338  T
Q  160 ttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||||||||||||||||||  ||   |||||||||| |||| | |||| || |||||||||||||||||||||||||||||||||||||||    
T  11242339 ttttaaaagataaatacaaaatgatgtatatatgtgatacaaccaaagatggaaatcactaccgtatacatgaggaacctcaaaccaccct 11242429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 9364384 - 9364292
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  9364384 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 9364292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 34756373 - 34756465
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  34756373 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 34756465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 40794322 - 40794438
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||| |||||||||||||||||||| |||||||| | ||  || |||| || |||||| ||||||||||||||||||||||||||||||    
T  40794322 taaaagaacaatgttttatttaaattttttaaaagacaaatacaaagagccgtaaatatatgatacaccaaaaggtgaaaatcactaccgtatacatgag 40794421  T
Q  234 gaacctcaaaccaccct 250  Q
     ||||||||||||||||    
T  40794422 aaacctcaaaccaccct 40794438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 250
Target Start/End: Complemental strand, 24395915 - 24395728
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatt 159  Q
    |||||||||||||||||||  |||||||| ||||||||| |  ||  ||||||||||||||||||         ||||| ||||| ||||||||||||||    
T  24395915 gttcctacgaatccggaggtacggctctgtaaataaaaagaaacccgtaataaaataaaaatgtattttttt--taaaa-aataatgttctatttaaatt 24395819  T
Q  160 ttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||||||||||||||||||||||   |||||||    |||| | ||||||||||||||| |||||||| ||||||||| | ||||||||||    
T  24395818 ttttaaaagataaatacaaggtgttgtatatatacaatacatccaaaggtgaaaatcaccaccgtatagatgaggaactttaaaccaccct 24395728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 19523292 - 19523200
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| |||||| |||||||||||||||    
T  19523292 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccatatacatgaggaacc 19523200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 28822349 - 28822441
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| |||||||||||||||| |||||    
T  28822349 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgatgaacc 28822441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 2412191 - 2412077
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || |||||||||||||||||||||| |||||||||| |||   |||||||| | | || | ||| |||||||||||||| |||||||||||||    
T  2412191 aaagaacaatgttctatttaaattttttaaaaaataaatacaaagtgtcgtatatatgcgatgcatccaaatgtgaaaatcactactgtatacatgagga 2412092  T
Q  236 acctcaaaccaccct 250  Q
    |||||||||||||||    
T  2412091 acctcaaaccaccct 2412077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 10407566 - 10407452
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||   || |||||| ||||| ||||| |||||||| |||||||||| ||||||    
T  10407566 taaaagaacaatgttctatttaaattttttaaaagataaacacaaggtgtcgtacatatgttgtacatctaaaagtgaaaattactaccgtatgcatgag 10407467  T
Q  234 gaacctcaaaccacc 248  Q
    ||| ||| |||||||    
T  10407466 gaatctccaaccacc 10407452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 10543776 - 10543663
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    ||||||||| |||| | ||||||||||||||||||||||| ||||||   |||||||| | |||| | ||||||||||||||||||||||||||| ||||    
T  10543776 aaagaataatgttccacttaaattttttaaaagataaatataaggtgatgtatatatgcgatacatccaaaggtgaaaatcactaccgtatacat-agga 10543678  T
Q  236 acctcaaaccaccct 250  Q
    | |||||||||||||    
T  10543677 atctcaaaccaccct 10543663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 26718865 - 26719045
Alignment:
Q  53 cagggcagttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctat 152  Q
    |||||| ||||||| |||||||||||||||| |||| || | |||| || ||  |||||||||||||| |||         | ||||||||| |||||||    
T  26718865 cagggccgttcctatgaatccggaggctcggttctgtaagtgaaaagagacccgtaataaaataaaaacgtattttttt--ttaaagaataatgttctat 26718962  T
Q  153 ttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    ||||| |||||||||||||||||||| |||   |||||||| | |||||  |||||||||||||||||||| |||||||||||    
T  26718963 ttaaaatttttaaaagataaatacaaagtgtcgtatatatgcgatacactcaaaggtgaaaatcactaccgcatacatgagga 26719045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 26988609 - 26988789
Alignment:
Q  53 cagggcagttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctat 152  Q
    |||||| ||||||| |||||||||||||||| |||| || | |||| || ||  |||||||||||||| |||         | ||||||||| |||||||    
T  26988609 cagggccgttcctatgaatccggaggctcggttctgtaagtgaaaagagacccgtaataaaataaaaacgtattttttt--ttaaagaataatgttctat 26988706  T
Q  153 ttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    ||||| |||||||||||||||||||| |||   |||||||| | |||||  |||||||||||||||||||| |||||||||||    
T  26988707 ttaaaatttttaaaagataaatacaaagtgtcgtatatatgcgatacactcaaaggtgaaaatcactaccgcatacatgagga 26988789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 36187886 - 36187980
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctc 240  Q
    |||||||||| ||||||||||| |||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||| ||||||    
T  36187886 gttctatttatattttttaaaatataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgagaaacctc 36187980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 16198801 - 16198893
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||| | |||||| |||||||||||| ||||||||||||||||||||||    
T  16198801 gttctatttatattttttaaaagataaatataaggtgtcgtatatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacc 16198893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 16799334 - 16799426
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||| ||||||| |||||||  |||||||| |||||||| |||||||||||| | ||||||||||||||||||||    
T  16799334 gttctatttatattttttaaaaaataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgattaccgtatacatgaggaacc 16799426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 30854422 - 30854330
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||  | |||||||||| |||| |||||||||||||||||    
T  30854422 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacactcagaggtgaaaatgactatcgtatacatgaggaacc 30854330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 38869370 - 38869462
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||| |||||||| |||||||||||| ||||||||||||||||| ||||    
T  38869370 gttctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgagaaacc 38869462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 22648734 - 22648845
Alignment:
Q  137 aagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaa 236  Q
    ||||| || ||||||||||||||||||||||||||||||||| |||   ||||||||||| ||| | |||||||| ||||||||| ||||| || || ||    
T  22648734 aagaacaatgttctatttaaattttttaaaagataaatacaatgtgtcgtatatatgtggcacatccaaaggtgacaatcactactgtataaataagaaa 22648833  T
Q  237 cctcaaaccacc 248  Q
    ||||||||||||    
T  22648834 cctcaaaccacc 22648845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 15480096 - 15480188
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||| ||   |||||||| |||||||| | |||||||||| |||||||||| |||||||||||    
T  15480096 gttctatttatattttttaaaagataaatacaagatgtcgtatatatgcggtacacccagaggtgaaaatgactaccgtatgcatgaggaacc 15480188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 27924172 - 27924084
Alignment:
Q  149 ctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaac 237  Q
    ||||||| ||||||||||||||||||| |||||||  |||||||| |||||| | |||||| ||||| |||||||||||||||||||||    
T  27924172 ctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtaaaaatgactaccgtatacatgaggaac 27924084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 31194619 - 31194706
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagg 234  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||| ||| | |||||||||| ||||||||||||||||||    
T  31194619 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtaaacccagaggtgaaaat-actaccgtatacatgagg 31194706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 7338092 - 7338023
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaat 215  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||    
T  7338092 gttctatttatattttttaaaagataaatacaaggtgtcgtatatatgcggtacacctaaaggtgaaaat 7338023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 2274983 - 2274891
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||    ||||||||  ||||||| | |||||||||| ||||||||||||| ||||||||    
T  2274983 gttctatttatattttttaaaagataaatacaaggtatcgtatatatgcagtacacccagaggtgaaaatgactaccgtatacacgaggaacc 2274891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 16592081 - 16592173
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||| ||||||||||||||| ||||   |||||||| |||||||| | |||||||||| ||||||||||| ||||||||||    
T  16592081 gttctatttatattttctaaaagataaatacagggtgtcgtatatatgcggtacacccagaggtgaaaatgactaccgtatatatgaggaacc 16592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 23284069 - 23284161
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||   |||||||||||||   |||||||| |||||||| |||| ||||||| ||||||||||||||||||||||    
T  23284069 gttctatttatattttttaaagactaaatacaaggtgtcgtatatatgcggtacacccaaagatgaaaatgactaccgtatacatgaggaacc 23284161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 40389543 - 40389635
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||| |||||| | |||||||||||| ||||||||||  ||||||||||    
T  40389543 gttctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacatccaaaggtgaaaatgactaccgtatttatgaggaacc 40389635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 41911614 - 41911728
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || |||| | |||| |||||||||||| ||||||||||||   |||||| | |||||||| ||| || |||||||||| |||||| |||||||    
T  41911614 aaagaacaatgttcaacttaatttttttaaaagagaaatacaaggtgtcgtatataagcggtacacccaaaagtaaaaatcactatcgtatatatgagga 41911713  T
Q  236 acctcaaaccaccct 250  Q
    |||||||| ||||||    
T  41911714 acctcaaatcaccct 41911728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 7671018 - 7670929
Alignment:
Q  146 gttctatttaaatttttt-aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagg 234  Q
    |||||||||| ||||||| |||||||||||| |||||||  ||||| |  |||||||| |||||||||||| ||||||||||||||||||    
T  7671018 gttctatttatatttttttaaaagataaatataaggtgccgtatatttacggtacacccaaaggtgaaaatgactaccgtatacatgagg 7670929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 22986565 - 22986657
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| | ||||||||||||| |||||||| |||   |||||||| |||||||| | |||||||||| ||||||||||||||||| ||||    
T  22986565 gttctattaatattttttaaaagacaaatacaaagtgtcgtatatatgcggtacacccataggtgaaaatgactaccgtatacatgagaaacc 22986657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 606259 - 606211
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtg 182  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||    
T  606259 taaaagaacaatgttctatttaaattttttaaaagataaatacaaggtg 606211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 31881441 - 31881528
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagg 234  Q
    |||||||||| ||||||||||||||||||||| |||||  |||||||| || ||| | | || ||||||| ||||||||||||||||||    
T  31881441 gttctatttatattttttaaaagataaatacacggtgccgtatatatgcggaacatccagagatgaaaat-actaccgtatacatgagg 31881528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 17345049 - 17344947
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    ||||||||||||||||||| |  ||||||||||| ||  || |||||| |||||||| |||| | ||||| |||||||||| ||  | ||||||||||||    
T  17345049 gttctatttaaattttttatataataaatacaagatgtcatgtatatgcggtacacccaaagataaaaattactaccgtatccacaaagaacctcaaacc 17344950  T
Q  246 acc 248  Q
    |||    
T  17344949 acc 17344947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 15639724 - 15639635
Alignment:
Q  158 ttttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccac 247  Q
    |||||| ||||||||||||||||||   |||||||| | |||| | |||| |||||||||||  ||||||||| |||||||| |||||||    
T  15639724 tttttttaaagataaatacaaggtgacgtatatatgcgatacatccaaagatgaaaatcactgtcgtatacataaggaaccttaaaccac 15639635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 27530587 - 27530543
Alignment:
Q  135 aaaagaataacgttctatttaaattttttaaaagataaatacaag 179  Q
    ||||||| || ||||||||||||||||||||||||| ||||||||    
T  27530587 aaaagaacaatgttctatttaaattttttaaaagattaatacaag 27530543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 178
Target Start/End: Complemental strand, 22875034 - 22875003
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaa 178  Q
    ||||||||||||||||||||||||||||||||    
T  22875034 ttctatttaaattttttaaaagataaatacaa 22875003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 35080765 - 35080806
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaata 175  Q
    |||||||| || ||| ||||||||||||||||||||||||||    
T  35080765 taaaagaacaatgttttatttaaattttttaaaagataaata 35080806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 64 - 248
Target Start/End: Complemental strand, 52468463 - 52468282
Alignment:
Q  64 ctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatttttt 163  Q
    |||||||| |||||||||||||||| |  | |||| ||| || |||||||||||||| |||         |||||||| || ||||||||||||||||||    
T  52468463 ctacgaattcggaggctcggctctgtaggtgaaaagaggtctgtaataaaataaaaacgtatttttt---taaaagaacaatgttctatttaaatttttt 52468367  T
Q  164 aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    ||||||||||||||||||||  |||||||||  |||| | ||||||||||||||||||||||| |||||||||||||||||||||    
T  52468366 aaaagataaatacaaggtgccgtatatatgttatacatccaaaggtgaaaatcactaccgtatgcatgaggaacctcaaaccacc 52468282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 27112128 - 27112024
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  27112128 gttcaatttaaattttttaaaagataaatacaaggtgacatatatatgcgatacaccaaaatgtgaaaatcactaccgtatacatgaggaacctcaaacc 27112029  T
Q  246 accct 250  Q
    |||||    
T  27112028 accct 27112024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 10041997 - 10042113
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||||||||||| |||| |||||||||||||||  ||| |||||| |||||||||| |||||||||||||||||||||| |||    
T  10041997 taaaagaacaatgttctatttaaatttttaaaaaaataaatacaaggtgccgtatgtatgtgatacacctaaatgtgaaaatcactaccgtatacaggag 10042096  T
Q  234 gaacctcaaaccaccct 250  Q
    |||||||||| ||||||    
T  10042097 gaacctcaaatcaccct 10042113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 24397028 - 24396928
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccc 249  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| |||||  ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  24397028 tatttaaattttttaaaagataaatataaggtgcagtatatatgtgatacactcaaaggtgaaaatcactatcgtatacatgaggaacctcaaactaccc 24396929  T
Q  250 t 250  Q
    |    
T  24396928 t 24396928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 36118377 - 36118571
Alignment:
Q  53 cagggcagttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctat 152  Q
    |||||| |||||||||||| |||| |||||||| || || | |||| ||||   |||||||||||||| |||         |||| ||| || |||||||    
T  36118377 cagggccgttcctacgaattcggaagctcggctttgtaagtgaaaagaggctcgtaataaaataaaaacgtatttttt---taaatgaacaatgttctat 36118473  T
Q  153 ttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    ||||||||||||||||||||||||||||||   |||||||||| |||||| |||  ||||||||||||||||||||||||| |||||| |||||||||    
T  36118474 ttaaattttttaaaagataaatacaaggtgtcgtatatatgtgatacacccaaatatgaaaatcactaccgtatacatgagtaacctctaaccaccct 36118571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 54780875 - 54780783
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  54780875 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 54780783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 47129161 - 47128993
Alignment:
Q  68 gaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaattttttaaaa 167  Q
    |||| |||||||||||||||| |||| |||| |||||  | ||||||| ||||||||         |||||||| || |||||||||| |||||||||||    
T  47129161 gaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaatgtattttttt--taaaagaacaatgttctatttatattttttaaaa 47129064  T
Q  168 gataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    ||||||||||||||||  |||||||| |||||||| | |||| ||||| ||||||||||||||||||||||    
T  47129063 gataaatacaaggtgccgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacc 47128993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 51691837 - 51692030
Alignment:
Q  52 acagggcagttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttcta 151  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||| ||||   ||||||||     |||||         |||||||  || ||||||    
T  51691837 acagggccgttcctacgaatccggaggctcggctctgcaagtgaaaagaggctcgtaataaaa-----atgtattttttt--taaaagagcaatgttcta 51691929  T
Q  152 tttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacc--taaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccc 249  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||||||   ||| ||||||||||||||| |||||| || ||||||||||||||||    
T  51691930 tttaaattttttaaaagataaatacaaggtgccgtatatatgcggtacaccaaaaaaagtgaaaatcactaccatatacacgatgaacctcaaaccaccc 51692029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 2790738 - 2790842
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||||||||| ||||||||||||||||||| ||||| |  |||||||| |||||||| |||||||||||| |||||||||||||||||    
T  2790738 taaaagaacaatgttctatttatattttttaaaagataaatataaggtaccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgag 2790837  T
Q  234 gaacc 238  Q
    |||||    
T  2790838 gaacc 2790842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 37777232 - 37777324
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  37777232 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 37777324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 38209600 - 38209692
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  38209600 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 38209692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 39329389 - 39329505
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||||   |||||||||| |||||| |||| ||||||||  ||||||||||| |||    
T  39329389 taaaagaacaatgttctctttaaattttttaaaagataaatacaaggtgttgtatatatgtgatacacccaaagatgaaaatccataccgtatacaggag 39329488  T
Q  234 gaacctcaaaccaccct 250  Q
    |||| ||||||||||||    
T  39329489 gaacatcaaaccaccct 39329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 43455540 - 43455632
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  43455540 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 43455632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 4167911 - 4168002
Alignment:
Q  157 attttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    |||||||||||||||||||||||||||  |||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  4167911 attttttaaaagataaatacaaggtgccgtatatatgcgatacacccaaaggtgaaaatcactaccttatacatgaggaacctcaaatcacc 4168002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 32915483 - 32915391
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| | |||| ||||| | ||||||||||||||||||||    
T  32915483 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgtggtacacccagaggtaaaaatgattaccgtatacatgaggaacc 32915391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 5128852 - 5128945
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctc 240  Q
    ||||||||| |||||||||||||||||||||||||||  ||||||||  || |||| | |||||||||| ||||||||||||||||||||||||    
T  5128852 ttctatttatattttttaaaagataaatacaaggtgccgtatatatgcagtgcacccagaggtgaaaatgactaccgtatacatgaggaacctc 5128945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 10978998 - 10978906
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||| |||||||| | | |||||||| ||||||||||||||||||||||    
T  10978998 gttctatttatattttttaaaagataaatacaaggtgtcgtatatatgcggtacacccagaagtgaaaatgactaccgtatacatgaggaacc 10978906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 34027677 - 34027585
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||| |||||||| |||||||||||| ||||| ||||||||||||||||    
T  34027677 gttctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactacggtatacatgaggaacc 34027585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 34768583 - 34768675
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| | |||||||||| | ||||||||||||||||||||    
T  34768583 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccagaggtgaaaatgattaccgtatacatgaggaacc 34768675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 37744918 - 37745021
Alignment:
Q  146 gttctatttaaatttttt-aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaac 244  Q
    |||||||||||||||||| |||||||||||| ||||||    ||||||| | |||| | ||||||||||||||||||||||||| |||||||||||||||    
T  37744918 gttctatttaaatttttttaaaagataaatataaggtgtcgcatatatgcgatacatccaaaggtgaaaatcactaccgtatacttgaggaacctcaaac 37745017  T
Q  245 cacc 248  Q
    ||||    
T  37745018 cacc 37745021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 35465216 - 35465115
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||| |||||| |||||||| |||||||||| |||||||  |||||||| |||||||||||| |||||||| |||||||||||||||||    
T  35465216 taaaagaacaatgttatatttatattttttacaagataaataaaaggtgcg-tatatatgcggtacacctaaaagtgaaaataactaccgtatacatgag 35465118  T
Q  234 gaa 236  Q
    |||    
T  35465117 gaa 35465115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 35779345 - 35779427
Alignment:
Q  157 attttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacct 239  Q
    ||||||||||||||||||||||||||   |||||||| |||||||| |||||||||||| | |||||||||||||||||||||    
T  35779345 attttttaaaagataaatacaaggtgtcgtatatatgcggtacacccaaaggtgaaaatgattaccgtatacatgaggaacct 35779427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 37514757 - 37514671
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatga 232  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||  | |||||||||| ||||||||||||||||    
T  37514757 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacactcagaggtgaaaatgactaccgtatacatga 37514671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 54083253 - 54083343
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||| | ||||| ||||||||||||||||||||||    
T  54083253 tctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaagataaaaatgactaccgtatacatgaggaacc 54083343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 2135331 - 2135428
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaac 244  Q
    ||||||||||||||||||||||||||||||||||||   |||||||| | |||| | |||||| || ||||||| |||||| ||||||||||||||||    
T  2135331 ttctatttaaattttttaaaagataaatacaaggtgtcgtatatatgcgatacatccaaaggtaaacatcactatcgtatatatgaggaacctcaaac 2135428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 1105630 - 1105538
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||    |||||||| |||||||||| |||||||||| |||||| |||||||||| ||||    
T  1105630 gttctatttatattttttaaaagataaatacaaggtatcgtatatatgcggtacacctagaggtgaaaatgactaccatatacatgagcaacc 1105538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 32128682 - 32128598
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacat 230  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||| |||||||| |||||||||||| ||||||||||||||    
T  32128682 gttctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacat 32128598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 36178770 - 36178667
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    |||||||||||||| ||||||||||||||||||||||   |||||||| | |||||| ||| ||||||||||||||| ||||||||| ||| | ||||||    
T  36178770 gttctatttaaattatttaaaagataaatacaaggtgtcgtatatatgcgatacacccaaatgtgaaaatcactaccttatacatgaagaatc-caaacc 36178672  T
Q  246 accct 250  Q
    |||||    
T  36178671 accct 36178667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 36362868 - 36362983
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || | ||| ||||||||||||||||||||||||||| ||||  ||||||||   |||||| ||| ||| ||||||||||| ||||||| ||    
T  36362868 taaaagaacaatgctctgtttaaattttttaaaagataaatacaaagtgccgtatatatgcaatacacccaaatgtggaaatcactaccatatacat-ag 36362966  T
Q  234 gaacctcaaaccaccct 250  Q
    |||||||||||||||||    
T  36362967 gaacctcaaaccaccct 36362983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 45656269 - 45656169
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccc 249  Q
    ||||||||||||||||||||||||| |||||||  ||||||||| | || | | ||| ||||||||||| | ||||||||||| ||||||||||||||||    
T  45656269 tatttaaattttttaaaagataaatgcaaggtgtcatatatatgcgataaatccaaatgtgaaaatcacgaacgtatacatgacgaacctcaaaccaccc 45656170  T
Q  250 t 250  Q
    |    
T  45656169 t 45656169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 48209338 - 48209246
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | | ||||| || ||||||||||||||||| ||||    
T  48209338 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagatgtgaatatgactaccgtatacatgagaaacc 48209246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 40089601 - 40089522
Alignment:
Q  159 tttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    ||||||||||||||||| |||||||  |||||||| |||||| | |||||||||||| ||||||||||||||||||||||    
T  40089601 tttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacc 40089522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 16845120 - 16845027
Alignment:
Q  146 gttctatttaaatttttt-aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||| |||||||||||| ||||||   ||||||||| ||||||| || ||||||||| ||||||||||||||||||||||    
T  16845120 gttctatttatatttttttaaaagataaatataaggtgtcgtatatatgtagtacacccaacggtgaaaatgactaccgtatacatgaggaacc 16845027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 40217327 - 40217226
Alignment:
Q  149 ctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    ||||||||||||||||||||||||||| ||||||   |||||||| | |||| | |||| ||||||||| || | |||||||||| ||||||||||||||    
T  40217327 ctatttaaattttttaaaagataaatataaggtgtcgtatatatgcgatacatccaaagatgaaaatcattagcatatacatgagtaacctcaaaccacc 40217228  T
Q  249 ct 250  Q
    ||    
T  40217227 ct 40217226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 13460305 - 13460213
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||| |||| ||| | | |||||||| |||||||||||||| |||||||    
T  13460305 gttctatttatattttttaaaagataaatacaaggtgtcgtatatatgcggtatacccagatgtgaaaatgactaccgtatacataaggaacc 13460213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 39655252 - 39655334
Alignment:
Q  135 aaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatca 217  Q
    ||||||| || ||||||||||||||||||||||||||||||||| || |   ||||||| |||||||| ||||||||||||||    
T  39655252 aaaagaacaatgttctatttaaattttttaaaagataaatacaaagttccgcatatatgcggtacacccaaaggtgaaaatca 39655334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 10428206 - 10428308
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaag--------gtgaaaatcactaccgtatacatgaggaac 237  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | ||        |||||||| |||||||||||||||||||||    
T  10428206 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaattgtgaaaatgactaccgtatacatgaggaac 10428305  T
Q  238 ctc 240  Q
    |||    
T  10428306 ctc 10428308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 19498600 - 19498510
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||  | |||||| | |||||||||||| ||||| ||||||||||||||||    
T  19498600 gttctatttatattttttaaaagataaatataaggtgccgtatat--gcggtacagccaaaggtgaaaatgactactgtatacatgaggaacc 19498510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 15735188 - 15735089
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    ||||||||||||||||||||||||||||||||||  |   |||||||     ||||| |||  ||||||||| ||||||||||||||||||| |||||||    
T  15735188 gttctatttaaattttttaaaagataaatacaagacgtcgtatatat-----acaccaaaaaatgaaaatcattaccgtatacatgaggaacttcaaacc 15735094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 29425187 - 29425287
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccc 249  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||  |||||  |||||||||||||  ||||| || ||| ||| |||||||||||||||    
T  29425187 tatttaaattttttaaaaaataaatataaggtgccgtatatatgcagtacatttaaaggtgaaaattgctaccatacacacgagtaacctcaaaccaccc 29425286  T
Q  250 t 250  Q
    |    
T  29425287 t 29425287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 17679497 - 17679432
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaa 212  Q
    ||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||    
T  17679497 ttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaa 17679432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 16882404 - 16882484
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtat 226  Q
    |||||||||| | ||||||||||||||||| |||||||  | |||||  |||||||| |||||||||||| ||||||||||    
T  16882404 gttctatttatactttttaaaagataaatataaggtgccgtgtatatacggtacaccaaaaggtgaaaatgactaccgtat 16882484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 30507044 - 30507162
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncat-aaaagaataacgttctatttaaat 158  Q
    |||||||||||||||||||||||  | || || | |||| || || |||||||||||||||||||         | ||||||| || |||||||||||||    
T  30507044 gttcctacgaatccggaggctcgattttgtaagtgaaaagagacccataataaaataaaaatgtatttttttttttaaaagaacaatgttctatttaaat 30507143  T
Q  159 tttttaaaagataaataca 177  Q
    |||||||||||||||||||    
T  30507144 tttttaaaagataaataca 30507162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 23509847 - 23509899
Alignment:
Q  186 tatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| |||||||||| |||||||||| ||||||||| ||||||||||||    
T  23509847 tatatatgcggtacacctagaggtgaaaatgactaccgtagacatgaggaacc 23509899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 9578673 - 9578728
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggt-gcaatatatatgtggtaca 200  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||    
T  9578673 gttctatttatattttttaaaagataaatacaaggtagccatatatatgcggtaca 9578728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 24614061 - 24614018
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaag 179  Q
    |||||| || ||||||||||||||||||||||||||||||||||    
T  24614061 aaagaacaatgttctatttaaattttttaaaagataaatacaag 24614018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 24969486 - 24969443
Alignment:
Q  195 ggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  24969486 ggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 24969443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 38352313 - 38352356
Alignment:
Q  195 ggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| |||||||||||| |||||||| |||||||||||||    
T  38352313 ggtacacccaaaggtgaaaatgactaccgtgtacatgaggaacc 38352356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 11906904 - 11906954
Alignment:
Q  150 tatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtaca 200  Q
    |||||||||||||  ||||||||||||||||| |  |||||||||||||||    
T  11906904 tatttaaatttttataaagataaatacaaggtaccgtatatatgtggtaca 11906954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 51964809 - 51964737
Alignment:
Q  146 gttctatttaaatttttt---aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaat 215  Q
    |||||||||| |||||||   ||||||||||||||||||||  |||||||| | |||||| | ||||||||||    
T  51964809 gttctatttatattttttttaaaaagataaatacaaggtgccgtatatatgcgatacacccagaggtgaaaat 51964737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 11906822 - 11906891
Alignment:
Q  55 gggcagttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgta 124  Q
    |||| |||||||||||| ||||||||||||| |  || | |||| |||||  ||||||||||||||||||    
T  11906822 gggccgttcctacgaattcggaggctcggctatataagtgaaaagaggcccgtaataaaataaaaatgta 11906891  T

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Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 23508519 - 23508556
Alignment:
Q  146 gttctattta-aattttttaaaagataaatacaaggtg 182  Q
    |||||||||| |||||||||||||||||||||||||||    
T  23508519 gttctatttataattttttaaaagataaatacaaggtg 23508556  T

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Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 55255355 - 55255318
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgc 183  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  55255355 gttccatttatattttttaaaagataaatacaaggtgc 55255318  T

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Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 55255307 - 55255275
Alignment:
Q  206 aggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||    
T  55255307 aggtgaaaatgactaccgtatacatgaggaacc 55255275  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 60 - 248
Target Start/End: Complemental strand, 16097184 - 16096998
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatt 159  Q
    ||||||||||||  ||||||||||||||| || | ||||  ||||  |||||||||||| |||||         |||||||| || ||||||||||||||    
T  16097184 gttcctacgaatttggaggctcggctctgtaagtgaaaagtggcccgtaataaaataaatatgtattttgtt--taaaagaacaatgttctatttaaatt 16097087  T
Q  160 ttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    ||||||||||||||||||||||||  ||||||||  ||||||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  16097086 ttttaaaagataaatacaaggtgccgtatatatgatgtacacccaaaggtgaaaattactaccttatacatgaggaacctcaaaccacc 16096998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 21665627 - 21665814
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatt 159  Q
    ||||||||||||| ||||| ||||||||| || | |||| || ||  ||||||||||||||||||         |||||||| || ||||||||||||||    
T  21665627 gttcctacgaatctggagggtcggctctgtaagtgaaaagagacccgtaataaaataaaaatgtatttttt---taaaagaacaatgttctatttaaatt 21665723  T
Q  160 ttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||||||||||||||||| ||||   |||||||||| |||| | ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  21665724 ttttaaaagataaatacacggtgtcgtatatatgtgatacatcaaaatgtgaaaatcactaccgtatacatgaggaaccacaaaccaccct 21665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 38400899 - 38400786
Alignment:
Q  137 aagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaa 236  Q
    ||||| || |||||||||||||||||||||||||||||||||||||  ||||||||| | ||||   |||||||||||||||||||||||||||||||||    
T  38400899 aagaacaatgttctatttaaattttttaaaagataaatacaaggtgtcatatatatgcgatacattcaaaggtgaaaatcactaccgtatacatgaggaa 38400800  T
Q  237 cctcaaaccaccct 250  Q
    ||||||||||||||    
T  38400799 cctcaaaccaccct 38400786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 24035543 - 24035659
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||  |||| ||| | ||||||||||||||||||||||||||| |||||||||    
T  24035543 taaaagaacaatgttctatttaaattttttaaaagataaatacaaggtgccgtataaatgcgatacacctaaaggtgaaaatcactaccgcatacatgag 24035642  T
Q  234 gaacctcaaaccaccct 250  Q
    ||| | |||||||||||    
T  24035643 gaatcgcaaaccaccct 24035659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 3155309 - 3155217
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  3155309 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaacc 3155217  T

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Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 10762575 - 10762667
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  10762575 gttctatttatattttttaaaagataaatataaggtgcggtatatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 10762667  T

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Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 12337458 - 12337550
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| | |||||||||| ||||||||||||||||||||||    
T  12337458 gttctatttatattttttaaaagataaatacaaggtgtcatatatatgtggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 12337550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 24410529 - 24410437
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  24410529 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 24410437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 135 - 250
Target Start/End: Original strand, 12134039 - 12134154
Alignment:
Q  135 aaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagg 234  Q
    ||||||| || ||||||||||||   ||||||||||||||||||||| |  |||||||| | |||||| ||| ||||||||||||||||||||||| |||    
T  12134039 aaaagaacaatgttctatttaaaaaatttaaaagataaatacaaggtaccgtatatatgcgatacacccaaaagtgaaaatcactaccgtatacattagg 12134138  T
Q  235 aacctcaaaccaccct 250  Q
    ||||||||||||||||    
T  12134139 aacctcaaaccaccct 12134154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 16227379 - 16227482
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacca 246  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||| |||||| | || |||||||||||||  ||||||| |||||||||||||||    
T  16227379 ttctatttaaattttttaaaagataaatacaaggtgtcgtatatatgtgatacaccgatagatgaaaatcactactatatacataaggaacctcaaacca 16227478  T
Q  247 ccct 250  Q
    ||||    
T  16227479 ccct 16227482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 9046134 - 9046029
Alignment:
Q  134 taaaagaataacgttctatttaaatttttt-aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatga 232  Q
    |||||||| || |||||||||| ||||||| |||||||||||| |||||||  |||||||| |||||||| |||||||||||| ||||||||||||||||    
T  9046134 taaaagaacaatgttctatttatatttttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatga 9046035  T
Q  233 ggaacc 238  Q
    ||||||    
T  9046034 ggaacc 9046029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 26716221 - 26716128
Alignment:
Q  146 gttctatttaaatttttt-aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||| |||||||||||| ||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  26716221 gttctatttatatttttttaaaagataaatataaggtgccatatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 26716128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 4505986 - 4505894
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||| ||||| ||||||||||||||||||||||    
T  4505986 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacc 4505894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 6965099 - 6965007
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||| ||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  6965099 gttctatttatattttttaaaagataaatacaaagtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 6965007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 29939872 - 29939964
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||| |||||||||||||||||   |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  29939872 gttctatttatattttttacaagataaatacaaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 29939964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 13800543 - 13800657
Alignment:
Q  135 aaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtaca-cctaaaggtgaaaatcactaccgtatacatgag 233  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||||  |||||||| | |||| || ||||||||||||||||||  |||||| |||    
T  13800543 aaaagaacaatgttctatttaaattttttaaaagataaatataaggtgccgtatatatgcgatacacccaaaaggtgaaaatcactactatatacacgag 13800642  T
Q  234 gaacctcaaaccacc 248  Q
    |||||||||| ||||    
T  13800643 gaacctcaaatcacc 13800657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 27506752 - 27506841
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaac 237  Q
    |||||||| ||||||||||||||||||| |||||||  ||||||||||||||||| |||||| ||||| ||||| |||||||||||||||    
T  27506752 tctatttatattttttaaaagataaatataaggtgccgtatatatgtggtacacccaaaggtaaaaatgactactgtatacatgaggaac 27506841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 8907077 - 8907181
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||| ||  |||||||| |||||||| | |||| ||||| |||||||||||||||||    
T  8907077 taaaagagtaatgttctatttatattttttaaaagataaatacaaggcgccgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgag 8907176  T
Q  234 gaacc 238  Q
     ||||    
T  8907177 aaacc 8907181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 28425708 - 28425816
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||   ||||||||  ||||||| ||| ||||||||||||||| |||| |||||    
T  28425708 taaaagaacaatgttctatttaaaaattttaaaagataaatacaaggtgtcgtatatatgcagtacacccaaatgtgaaaatcactaccatatatatgag 28425807  T
Q  234 gaacctcaa 242  Q
    |||||||||    
T  28425808 gaacctcaa 28425816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 42029247 - 42029166
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatca 217  Q
    |||||| || |||||||||||||||||||||||||||||| ||||||  ||||| |||| ||||||||||||||||||||||    
T  42029247 aaagaacaatgttctatttaaattttttaaaagataaatataaggtgtcatatacatgttgtacacctaaaggtgaaaatca 42029166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 3953098 - 3953006
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||| ||| |||||||| | |||||||||| | |||||||| |||||||||||    
T  3953098 gttctatttatattttttaaaagataaatacaaggtgccgtatacatgcggtacacccagaggtgaaaatgattaccgtatgcatgaggaacc 3953006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 7162876 - 7162784
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||| ||  | |||||||||| ||||||||||| ||||||||||    
T  7162876 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtatactcagaggtgaaaatgactaccgtatatatgaggaacc 7162784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 7742131 - 7742245
Alignment:
Q  134 taaaagaataacgttctatttaaatttt-ttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatga 232  Q
    |||||||| || |||||||||| ||||| ||||||||||||||||| |||  ||||||||| | |||| | |||||||||||  |||| ||||| |||||    
T  7742131 taaaagaacaatgttctatttatatttttttaaaagataaatacaatgtgtcatatatatgcgttacatccaaaggtgaaaaatactatcgtatgcatga 7742230  T
Q  233 ggaacctcaaaccac 247  Q
    |||||||||||||||    
T  7742231 ggaacctcaaaccac 7742245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 11912757 - 11912871
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || |||||||||||||||   |||| |||||||||| ||||  ||||||||   |||| | |||| |||||||||||||||||||||| ||||    
T  11912757 aaagaacaatgttctatttaaatttaaaaaaaaataaatacaaagtgccgtatatatgcaatacatccaaagatgaaaatcactaccgtatacataagga 11912856  T
Q  236 acctcaaaccaccct 250  Q
    |||||||||||||||    
T  11912857 acctcaaaccaccct 11912871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 34694067 - 34693991
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactacc 222  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| | |||| ||||| ||||||    
T  34694067 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgtggtacacccagaggtcaaaatgactacc 34693991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 34716479 - 34716403
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactacc 222  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| | |||| ||||| ||||||    
T  34716479 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgtggtacacccagaggtcaaaatgactacc 34716403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 37182739 - 37182658
Alignment:
Q  169 ataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    ||||||||||||||   ||||||||   |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  37182739 ataaatacaaggtgtcgtatatatgcaatacacccaaaagtgaaaatcactaccgtatacatgaggaacctcaaatcaccct 37182658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 40636230 - 40636164
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaa 212  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||| |||||||| | |||||||    
T  40636230 gttctatttatattttttaaaagataaatacaaggtgtcgtatatatgcggtacacccagaggtgaa 40636164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 11952656 - 11952720
Alignment:
Q  186 tatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||||||||| |||||  | || ||||||||||||| | ||||||||||||||||||||||||||    
T  11952656 tatatatgtgatacactcatagatgaaaatcactactgcatacatgaggaacctcaaaccaccct 11952720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 22727530 - 22727614
Alignment:
Q  164 aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 248  Q
    ||||||||||||| | |||   |||||||| |||||||| ||| ||||||||||||||| |||||||||  | ||||||||||||    
T  22727530 aaaagataaatactatgtgacgtatatatgcggtacacccaaaagtgaaaatcactaccatatacatgataaccctcaaaccacc 22727614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 5952736 - 5952791
Alignment:
Q  157 attttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaa 212  Q
    |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||    
T  5952736 attttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaa 5952791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 10252518 - 10252472
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtg 182  Q
    |||||| || |||| ||||||||||||||||||||||||||||||||    
T  10252518 aaagaaaaatgttcaatttaaattttttaaaagataaatacaaggtg 10252472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 22727455 - 22727497
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatac 176  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  22727455 taaaagaacaatgttctatttaaattttttaaaagataaatac 22727497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 37622418 - 37622454
Alignment:
Q  214 atcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||||||||||||||| ||||||||||||||||||||    
T  37622418 atcactaccgtatacacgaggaacctcaaaccaccct 37622454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 12694855 - 12694794
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaat 121  Q
    |||| |||||||||||||||||||||||| || | |||| || ||  |||||||||||||||    
T  12694855 gttcttacgaatccggaggctcggctctgtaagtgaaaagagacccgtaataaaataaaaat 12694794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 11952588 - 11952624
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataa 172  Q
    |||||| || |||||||||||||||||||||||||||    
T  11952588 aaagaacaatgttctatttaaattttttaaaagataa 11952624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 37182820 - 37182760
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaa 120  Q
    ||||||| ||||||||||||||||||||| || | |||| || ||  ||||||||||||||    
T  37182820 gttcctaagaatccggaggctcggctctgtaagtgaaaagagacccgtaataaaataaaaa 37182760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 8420434 - 8420320
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||| ||| |||||||||||| ||||||| | |||    
T  8420434 taaaagaataatgttctatttaaattttttaaaagataaatacaaggtgccgtatatatgttgtacacccaaatgtgaaaatcactgccgtatatacgag 8420335  T
Q  234 gaacctcaaaccacc 248  Q
    |||||||||||||||    
T  8420334 gaacctcaaaccacc 8420320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 790031 - 789930
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacca 246  Q
    ||||||||||||||||||||  ||||||||||||||  |||||||||| ||||||| |||||| |||||||| ||| |||||||||||||||||||||||    
T  790031 ttctatttaaattttttaaacaataaatacaaggtgtcatatatatgttgtacacccaaaggtaaaaatcaccaccatatacatgaggaacctcaaacca 789932  T
Q  247 cc 248  Q
    ||    
T  789931 cc 789930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 8073336 - 8073440
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||   |||||||| |||||||| ||| |||||||| |||||||||||||||||    
T  8073336 taaaagagtaatgttctatttatattttttaaaagataaatacaaggtgtcgtatatatgcggtacacccaaaagtgaaaatgactaccgtatacatgag 8073435  T
Q  234 gaacc 238  Q
    |||||    
T  8073436 gaacc 8073440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 21582879 - 21582775
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||| |||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| |||||||||||||||||    
T  21582879 taaaagaacaatgttttatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgag 21582780  T
Q  234 gaacc 238  Q
    |||||    
T  21582779 gaacc 21582775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 54574825 - 54574941
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||||||||||| |||| ||||||||||||| |  |||||||| |||||||| ||| || |||||||||||| ||||||||||    
T  54574825 taaaagaacaatgttctatttaaatttttcaaaatataaatacaaggtaccgtatatatgcggtacacccaaaagtaaaaatcactaccatatacatgag 54574924  T
Q  234 gaacctcaaaccaccct 250  Q
    |||||||||||| ||||    
T  54574925 gaacctcaaaccgccct 54574941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 54619213 - 54619305
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  54619213 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 54619305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 37168463 - 37168372
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaac 237  Q
    |||||||||| ||||||||||||||||||| |||||||  ||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  37168463 gttctatttatattttttaaaagataaatataaggtgccgtatatatgtggtatacccaaaggtgaaaatgactaccgtatacatgaggaac 37168372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 25855527 - 25855414
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || ||||||||||||||||||||||||||| |||||||||   ||||||||| || |||| |||| ||||||||||||||||||||| || ||    
T  25855527 aaagaacaatgttctatttaaattttttaaaagataa-tacaaggtgtcgtatatatgtagtgcacccaaagttgaaaatcactaccgtatacacgaaga 25855429  T
Q  236 acctcaaaccaccct 250  Q
    |||||||||||||||    
T  25855428 acctcaaaccaccct 25855414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 3953894 - 3953998
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| |  ||||||||||||||    
T  3953894 taaaagaacaatgttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgaaaaccgtatacatgag 3953993  T
Q  234 gaacc 238  Q
    |||||    
T  3953994 gaacc 3953998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 32319155 - 32319263
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||   |||||||| |||||||| |||||||||||| |||| | |||| | |||||    
T  32319155 aaagaataatgttctatttaaattttttaaaagataaatacaaagtgttgtatatatgcggtacacccaaaggtgaaaattactatcttatatacgagga 32319254  T
Q  236 acctcaaac 244  Q
    |||||||||    
T  32319255 acctcaaac 32319263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 34290646 - 34290738
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||    
T  34290646 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacc 34290738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 44708573 - 44708481
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||  |||||||| |||||||||||| ||||||||||||||||||||||    
T  44708573 gttctatttatattttttaaaagataaatataaggtgccgtatatatccggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 44708481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 47467780 - 47467688
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| | |||||| | |||||||||| ||||||||||||||||||||||    
T  47467780 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcgatacacccagaggtgaaaatgactaccgtatacatgaggaacc 47467688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 9878698 - 9878789
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||| |||| ||||||||| |||||||    
T  9878698 ttctatttatattttttaaaagataaatataaggtgcagtatatatgcggtacacccaaaggtgaaaatgactatcgtatacataaggaacc 9878789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 42453512 - 42453403
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||| ||||||||||||||||||||||||||||||||  ||||||||| | |||||||||||||||       || ||||||||||||    
T  42453512 taaaagaacaatgttcaatttaaattttttaaaagataaatacaaggtgtcatatatatgcgatacacctaaaggtga-------tagcgtatacatgag 42453420  T
Q  234 gaacctcaaaccaccct 250  Q
    |||||||||||||||||    
T  42453419 gaacctcaaaccaccct 42453403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 50939245 - 50939335
Alignment:
Q  148 tctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| ||||||||||||||||||| |||||||  ||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||    
T  50939245 tctatttatattttttaaaagataaatataaggtgccgtatatatatggtacacccaaaggtaaaaatgactaccgtatacatgaggaacc 50939335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 42098897 - 42098805
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||| ||  | |||||||||| ||||||||||||||||||||||    
T  42098897 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtatactcagaggtgaaaatgactaccgtatacatgaggaacc 42098805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 43207248 - 43207339
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||| | |||||||||||| ||||||||||||||||||||||    
T  43207248 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacatc-aaaggtgaaaatgactaccgtatacatgaggaacc 43207339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 53506894 - 53506986
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| ||||| |  |||||||| |||||||| |||||||||||| ||||||||||||||||| ||||    
T  53506894 gttctatttatattttttaaaagataaatataaggtaccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgagaaacc 53506986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 26279650 - 26279532
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcact--accgtatacatg 231  Q
    |||||||| || |||||||||||||||||||||||||||||| ||||||   ||||||||   |||||| |||| |||||||||||  ||  ||||||||    
T  26279650 taaaagaacaatgttctatttaaattttttaaaagataaatagaaggtgtcgtatatatgcaatacacccaaagatgaaaatcactacacattatacatg 26279551  T
Q  232 aggaacctcaaaccaccct 250  Q
    |||||||||||||||||||    
T  26279550 aggaacctcaaaccaccct 26279532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 38681103 - 38681193
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaa 236  Q
    |||||||||| |||||||||||||||||||||||||||  ||| |||| |||||| | | |||||||||| ||||||||||||||||||||    
T  38681103 gttctatttatattttttaaaagataaatacaaggtgccgtatgtatgcggtacatccagaggtgaaaatgactaccgtatacatgaggaa 38681193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 27078579 - 27078671
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||| ||||  |||||||| |||| ||| | |||||||||| ||||||||||||||||| ||||    
T  27078579 gttctatttatattttttaaaagataaatacaaagtgccgtatatatgcggtatacccagaggtgaaaatgactaccgtatacatgagaaacc 27078671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 27084376 - 27084468
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||| ||||  |||||||| |||| ||| | |||||||||| ||||||||||||||||| ||||    
T  27084376 gttctatttatattttttaaaagataaatacaaagtgccgtatatatgcggtatacccagaggtgaaaatgactaccgtatacatgagaaacc 27084468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 28689371 - 28689475
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    ||||||||||||||||  ||||||||||||||||||||  |||||||| | || | | |||||||||||||||| ||||||||||||| || |||||||     
T  28689371 gttctatttaaattttcaaaaagataaatacaaggtgccgtatatatgcgatatatccaaaggtgaaaatcactgccgtatacatgagaaatctcaaact 28689470  T
Q  246 accct 250  Q
    |||||    
T  28689471 accct 28689475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 49393195 - 49393085
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || ||||| ||||||||||||||||||||||||||||| |   ||||||||| ||||||| |||||| ||||| |||||||||||||||| ||    
T  49393195 aaagaacaatgttctctttaaattttttaaaagataaatacaaggcgtcgtatatatgt-gtacacccaaaggtaaaaattactaccgtatacatga-ga 49393098  T
Q  236 acctcaaaccacc 248  Q
    |||||||| ||||    
T  49393097 acctcaaatcacc 49393085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 53149324 - 53149416
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||  | || | ||||| ||||||||||||||||||||||    
T  53149324 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacactcagagataaaaatgactaccgtatacatgaggaacc 53149416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 54407168 - 54407252
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacat 230  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||| | |||||||||||| ||||||||||||||    
T  54407168 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacat 54407252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 36715940 - 36716123
Alignment:
Q  51 gacagggcagttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttct 150  Q
    |||||||| || |||  |||| |||||||||||||||| |||| |||| |||||  | ||||||||||||  ||         |||||||  || |||||    
T  36715940 gacagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaataaaaacataatttttatttaaaagagcaatgttct 36716039  T
Q  151 atttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagg 234  Q
    ||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||  || ||||||||| |||||    
T  36716040 atttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaacgaccaccgtatacgtgagg 36716123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 52374764 - 52374650
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||||||||||||   | |||||||||| |||   |||| ||| | |||| ||||||| |||||||||||||||||||||||     
T  52374764 taaaagaacaatgttctatttaaatttttttttaaataaatacaatgtgtcgtatagatgcgatacatctaaaggagaaaatcactaccgtatacatgaa 52374665  T
Q  234 gaacctcaaaccacc 248  Q
    |||||||| ||||||    
T  52374664 gaacctcataccacc 52374650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 36606061 - 36605973
Alignment:
Q  146 gttctatttaaattttttaaaa-gataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagg 234  Q
    |||||||||| ||||||||||| ||||||||||||||||  |||||||| |||||||| | || ||||||| ||||||||||||||||||    
T  36606061 gttctatttatattttttaaaaagataaatacaaggtgccgtatatatgcggtacacccagagatgaaaat-actaccgtatacatgagg 36605973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 18372579 - 18372485
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatat----gtggtacacctaaaggtgaaaatcactaccgtatacatgaggaa 236  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||    | |||||||  | |||||||||| ||||||||||||||||||||    
T  18372579 gttctatttatattttttaaaagataaatacaaggtgtcgtatatatgcgcgcggtacacacagaggtgaaaatgactaccgtatacatgaggaa 18372485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 29598179 - 29598103
Alignment:
Q  169 ataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacca 246  Q
    ||||||||||||| |  |||||||||| |||||  |||| ||||| |||||||||||||||||||||| |||||||||    
T  29598179 ataaatacaaggttccgtatatatgtgatacactcaaagatgaaa-tcactaccgtatacatgaggaatctcaaacca 29598103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 29620423 - 29620490
Alignment:
Q  171 aaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||||||  |||||||| |||| | | | |||||||||| ||||||||||||||||||||||    
T  29620423 aaatacaaggtgccgtatatatgcggtatatccagaggtgaaaatgactaccgtatacatgaggaacc 29620490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 23641316 - 23641382
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtaca 200  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||| |||   |||||||| ||||||    
T  23641316 taaaagaacaacattctatttatattttttaaaagataaatacaatgtgtcgtatatatgcggtaca 23641382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 50258633 - 50258726
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtaca-cctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||| ||||||||||||||   |||||||| |||||| ||  | ||||||||| ||||  |||| |||||||||||    
T  50258633 gttctatttatattttttaaaaaataaatacaaggtgtcgtatatatgcggtacacccggagggtgaaaatgactattgtatgcatgaggaacc 50258726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 48157186 - 48157143
Alignment:
Q  195 ggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||| |||||||||||| ||||| ||||||||||||||||    
T  48157186 ggtacacccaaaggtgaaaatgactactgtatacatgaggaacc 48157143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 2477594 - 2477698
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  2477594 gttcaatttaaattttttaaaagataaatacaaggtgacatatatatgcgatacaccaaaatgtgaaaatcactaccgtatacatgaggaacctcaaacc 2477693  T
Q  246 accct 250  Q
    |||||    
T  2477694 accct 2477698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 21183686 - 21183788
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacca 246  Q
    |||||||||||||||||||||||||||||||| ||    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  21183686 ttctatttaaattttttaaaagataaatacaaagtagcgtatatatgtggtacacccaaagttgaaaatcactaccgtatacatgaggaacctcaaacca 21183785  T
Q  247 ccc 249  Q
    |||    
T  21183786 ccc 21183788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 33774291 - 33774121
Alignment:
Q  68 gaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaattttttaaaa 167  Q
    |||| |||||||||||||||| |||| |||| |||||  ||||||||| ||||  ||         ||||||| ||| |||||||||| |||||||||||    
T  33774291 gaattcggaggctcggctctgaaaatgaaaagaggccagtaataaaatcaaaacataatttttttttaaaagagtaatgttctatttatattttttaaaa 33774192  T
Q  168 gataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    ||||||||||||||||  |||||||| |||||||| ||| |||||||| ||||||||||||||||||||||    
T  33774191 gataaatacaaggtgccgtatatatgcggtacacccaaatgtgaaaatgactaccgtatacatgaggaacc 33774121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 13727409 - 13727501
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  13727409 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 13727501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 19737702 - 19737794
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||| |||||||||||||||||||  |||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  19737702 gttctatttatatttttttaaagataaatacaaggtgccgtatatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaacc 19737794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 20711730 - 20711822
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  20711730 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 20711822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 21479590 - 21479498
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  21479590 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 21479498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 24711009 - 24711101
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||  | |||||||||| ||||||||||||||||||||||    
T  24711009 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgtggtacactcagaggtgaaaatgactaccgtatacatgaggaacc 24711101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 27788699 - 27788790
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    ||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  27788699 ttctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 27788790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 28075879 - 28075787
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||| | |||||| |||||||||||| ||||||||||||||||||||||    
T  28075879 gttctatttatattttttaaaagataaatataaggtgccgtatatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacc 28075787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 21280641 - 21280550
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaac 237  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| | |||| ||||| |||||||||||||||||||||    
T  21280641 gttctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaac 21280550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 34397953 - 34397859
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctc 240  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||| ||||||||||||||| ||||| |||| |||| ||||||||||||||    
T  34397953 gttctatttatattttttaaaagataaatacaaggtgacgtatatatgcggtacacctaaaggtaaaaatgactatcgtaaacatgaggaacctc 34397859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 1155859 - 1155947
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagg 234  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||| |||||| | | |||||||||| ||||||||||||||||||    
T  1155859 gttctatttatattttttaaaagataaatacaaggtgtcatatatatgcggtacatccagaggtgaaaatgactaccgtatacatgagg 1155947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 6159534 - 6159430
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    |||||||||| |||||||||||||||||||||| |||   |||||||| ||||||   ||||||| |||||||||||||||| || ||||||||||||||    
T  6159534 gttctatttatattttttaaaagataaatacaatgtgtcgtatatatgcggtacattcaaaggtggaaatcactaccgtatatataaggaacctcaaacc 6159435  T
Q  246 accct 250  Q
    |||||    
T  6159434 accct 6159430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 250
Target Start/End: Complemental strand, 20611968 - 20611782
Alignment:
Q  60 gttcctacgaatccggaggctcggctctgcaaataaaaataggcctataataaaataaaaatgtannnnnnncataaaagaataacgttctatttaaatt 159  Q
    |||||||||||| |||||||||||||||| || | |||| ||||| |||| |||||||||| ||        |    ||||  || |||||| |||||||    
T  20611968 gttcctacgaattcggaggctcggctctgtaagtgaaaagaggcccataaaaaaataaaaacgtttttttttc----aagataaatgttctacttaaatt 20611873  T
Q  160 ttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    ||||||| |||||||||||||||   |||||||  |  ||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  20611872 ttttaaacgataaatacaaggtgtcgtatatatacgacacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaactaccct 20611782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 4037031 - 4036940
Alignment:
Q  159 tttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    ||||||| |||||||||||||||||  ||||||| ||||||||| |||||| || |||||||||||||| ||||||||| ||||||||||||    
T  4037031 tttttaagagataaatacaaggtgccgtatatatatggtacacccaaaggtaaagatcactaccgtatatatgaggaacttcaaaccaccct 4036940  T

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Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 30832534 - 30832626
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||| ||||||||||| |||  ||||||||||||||||| | || ||||||| |||||||||| |||||||||||    
T  30832534 gttctatttacattttttaaaaaataaatacaagatgccgtatatatgtggtacacccagagatgaaaatgactaccgtatgcatgaggaacc 30832626  T

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Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 17354050 - 17353958
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||| |||||||| ||| |||||||| |||| ||||||||||| |||||    
T  17354050 gttctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaatgtgaaaatgactatcgtatacatgatgaacc 17353958  T

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Target: chr6; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 30121868 - 30121783
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactac 221  Q
    |||||| || ||| |||||||||||||||||| ||||||||||||||  ||||||||| | |||| | ||||||||||||||||||    
T  30121868 aaagaacaatgttttatttaaattttttaaaaaataaatacaaggtgtcatatatatgcgatacatccaaaggtgaaaatcactac 30121783  T

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Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 27314188 - 27314258
Alignment:
Q  146 gttctatttaaattttttaaaa-gataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaat 215  Q
    |||||||||| ||||||||||| ||||||||||||||||  |||||||| |||||||  | ||||||||||    
T  27314188 gttctatttatattttttaaaaagataaatacaaggtgccgtatatatgcggtacactcagaggtgaaaat 27314258  T

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Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 27994816 - 27994775
Alignment:
Q  195 ggtacacctaaaggtgaaaatcactaccgtatacatgaggaa 236  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  27994816 ggtacactcaaaggtgaaaatcactaccgtatacatgaggaa 27994775  T

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Target: scaffold0012 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 206489 - 206597
Alignment:
Q  136 aaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgagga 235  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||   |||||||| |||||||| || |||||||||||||||||||||||||||||    
T  206489 aaagaagaatgttctatttaaattttgtaaaagataaatacaaggtgtcgtatatatgcggtacacccaatggtgaaaatcactaccgtatacatgagga 206588  T
Q  236 acctcaaac 244  Q
    |||||||||    
T  206589 acctcaaac 206597  T

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Target: scaffold1320 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 1459 - 1346
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    ||||||||||| |||||||||||| ||||||||||||||||| |||||||  ||||||||   |||||| ||| ||||||||||||| ||||||||||||    
T  1459 taaaagaataatgttctatttaaaatttttaaaagataaatataaggtgctgtatatatgctatacacccaaatgtgaaaatcactatcgtatacatgag 1360  T
Q  234 gaacctcaaaccac 247  Q
    ||||||||||||||    
T  1359 gaacctcaaaccac 1346  T

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Target: scaffold0097 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 39018 - 38914
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    |||||||||||||||||||||||||||||||||||||   |||||||| | |||||  ||| |||||||||||||||||||| |||||||||||||||||    
T  39018 gttctatttaaattttttaaaagataaatacaaggtgtcgtatatatgcgatacacacaaatgtgaaaatcactaccgtatatatgaggaacctcaaacc 38919  T
Q  246 accct 250  Q
    |||||    
T  38918 accct 38914  T

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Target: scaffold0018 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 173520 - 173620
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacc 245  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||| | |||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  173520 gttctatttaaattttttaaaagataaatacaaggtaccgtatatatgcgatacacccaaaggtaaaaatcactaccgtatacgtgaggaacctcaaacc 173619  T
Q  246 a 246  Q
    |    
T  173620 a 173620  T

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Target: scaffold0039 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 106643 - 106539
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || |||||||||| ||||||||||||||||||| ||||||   |||||||| |||||||| |||||||||||| |||||||||||||||||    
T  106643 taaaagaacaatgttctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgag 106544  T
Q  234 gaacc 238  Q
    |||||    
T  106543 gaacc 106539  T

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Target: scaffold0182 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 24004 - 24107
Alignment:
Q  147 ttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaacca 246  Q
    ||||||||||||||||||||||||||||||||||||   |||||||| |||||||| ||| |||||||||| |||||||| ||| ||||| |||||||||    
T  24004 ttctatttaaattttttaaaagataaatacaaggtgtcgtatatatgcggtacacccaaaagtgaaaatcattaccgtatgcataaggaatctcaaacca 24103  T
Q  247 ccct 250  Q
    ||||    
T  24104 ccct 24107  T

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Target: scaffold0007 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 230857 - 230973
Alignment:
Q  134 taaaagaataacgttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgag 233  Q
    |||||||| || ||||||||||||||| |||||||||||||  ||||||   |||||||| | || ||| ||||||||||||||||||| ||||||||||    
T  230857 taaaagaacaatgttctatttaaatttgttaaaagataaatttaaggtgttgtatatatgcgatatacccaaaggtgaaaatcactaccttatacatgag 230956  T
Q  234 gaacctcaaaccaccct 250  Q
    |||| ||||||||||||    
T  230957 gaacttcaaaccaccct 230973  T

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Target: scaffold0070 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 1436 - 1344
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    |||||||||| ||||||||||||||||||||||| |||  |||||||| |||||||| | || ||||||| ||||||||||||||||||||||    
T  1436 gttctatttatattttttaaaagataaatacaagctgccgtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacc 1344  T

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Target: scaffold0022 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 40191 - 40076
Alignment:
Q  135 aaaagaataacgttctatttaaatttttt--aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatga 232  Q
    ||||||| || ||||||||||| ||||||  ||||||||||||||||||||  ||| ||||| |||||||  |||||||||||||| | |||||||||||    
T  40191 aaaagaacaatgttctatttaatttttttttaaaagataaatacaaggtgccgtatttatgttgtacaccctaaggtgaaaatcacaatcgtatacatga 40092  T
Q  233 ggaacctcaaaccacc 248  Q
    | ||||||||||||||    
T  40091 gcaacctcaaaccacc 40076  T

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Target: scaffold0022; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 138251 - 138136
Alignment:
Q  135 aaaagaataacgttctatttaaatttttt--aaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatga 232  Q
    ||||||| || ||||||||||| ||||||  ||||||||||||||||||||  ||| ||||| |||||||  |||||||||||||| | |||||||||||    
T  138251 aaaagaacaatgttctatttaatttttttttaaaagataaatacaaggtgccgtatttatgttgtacaccctaaggtgaaaatcacaatcgtatacatga 138152  T
Q  233 ggaacctcaaaccacc 248  Q
    | ||||||||||||||    
T  138151 gcaacctcaaaccacc 138136  T

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Target: scaffold0003 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 351360 - 351445
Alignment:
Q  162 ttaaaagataaatacaaggtgcaatatatatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccac 247  Q
    |||||||||||||||||||||   ||||||||| ||||||| ||||||||||||| |||| | ||||| |||| ||||||||||||    
T  351360 ttaaaagataaatacaaggtgtcgtatatatgttgtacacccaaaggtgaaaatcgctactgaatacacgaggtacctcaaaccac 351445  T

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Target: scaffold0227 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 16076 - 16016
Alignment:
Q  190 tatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccct 250  Q
    |||| |||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  16076 tatgcggtacatccaaagatgaaaatcactaccgtatacatgagaaacctcaaaccaccct 16016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 16158 - 16123
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaaggt 181  Q
    ||||||||||||||||||||||||||||||||||||    
T  16158 gttctatttaaattttttaaaagataaatacaaggt 16123  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 181969 - 181920
Alignment:
Q  189 atatgtggtacacctaaaggtgaaaatcactaccgtatacatgaggaacc 238  Q
    ||||| |||||| | | |||||||||| ||||||||||||||||||||||    
T  181969 atatgcggtacatccagaggtgaaaatgactaccgtatacatgaggaacc 181920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 183153 - 183121
Alignment:
Q  146 gttctatttaaattttttaaaagataaatacaa 178  Q
    |||||||||| ||||||||||||||||||||||    
T  183153 gttctatttatattttttaaaagataaatacaa 183121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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