View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_42 (Length: 279)
Name: NF9771_low_42
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 10378756 - 10378492
Alignment:
| Q |
1 |
aaatcagtttttgagtctgagttatttggctttgtgttggttctggaatttgccattcaacaccatctgcgtcatcttttggtggagagggactcccaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378756 |
aaatcagtttttgagtctgagttatttggctttgtgttggttctggaatttgccattcaacaccatctgcgtcatcttttggtggagagggactcccaga |
10378657 |
T |
|
| Q |
101 |
gtgctttgcaggctttccggaacccttcgttagtttcattttctctttgaaatgtggcataagtgtacgcatggaggcatttccatcctttcatctcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378656 |
gtgctttgcaggctttccggaacccttcgttagtttcattttctctttgaaatgtggcataagtgtacgcatggaggcatttccatcctttcatctcata |
10378557 |
T |
|
| Q |
201 |
tttttcgcgaaggaaattgttgtacagataagttagcaaatcatggtcacaacttggttgatgtt |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378556 |
tttttcgcgaaggaaattgttgtacagataagttagcaaatcatggtcacaacttggttgatgtt |
10378492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 35976513 - 35976592
Alignment:
| Q |
176 |
ggcatttccatcctttcatctcatatttttcgcgaaggaaattgttgtacagataagttagcaaatcatggtcacaacttgg |
257 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| ||||||||| |||||| | | ||||||||||||||||||| |
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| T |
35976513 |
ggcatttcca--ctttcatctcatatttttctcgaagggaattgttgtgtggataagcttgtgaatcatggtcacaacttgg |
35976592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 34796568 - 34796614
Alignment:
| Q |
191 |
tcatctcatatttttcgcgaaggaaattgttgtacagataagttagc |
237 |
Q |
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| T |
34796568 |
tcatctcatatttttcgtgaaggtaattgttgtgcggataagttagc |
34796614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 17117579 - 17117635
Alignment:
| Q |
194 |
tctcatatttttcgcgaaggaaattgttgtacagataagttagcaaatcatggtcac |
250 |
Q |
| |
|
|||||||||||||| || ||||| |||||| |||| || ||||||||| |||||||| |
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| T |
17117579 |
tctcatatttttcgtgagggaaactgttgtccagacaaattagcaaattatggtcac |
17117635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 31326664 - 31326557
Alignment:
| Q |
158 |
cataagtgtacgcatggaggcatttccatcctttcatctcatatttttcgcgaaggaaattgttgtacagataagttagcaaatcatggtcacaacttgg |
257 |
Q |
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|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| || |||||| |
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| T |
31326664 |
cataattgtacgcatggaggcatttccatcatttcatctcatatttttcgcgaaggaaattgttgtgcggataagttagcaaattatggttacgacttgg |
31326565 |
T |
|
| Q |
258 |
ttgatgtt |
265 |
Q |
| |
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||||||| |
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|
| T |
31326564 |
ctgatgtt |
31326557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 31329344 - 31329213
Alignment:
| Q |
20 |
agttatttggctttgtgttggttctggaatttgccattcaacaccatctgcgtcatcttttggtggagagggactcccagagtgctttgcaggctttccg |
119 |
Q |
| |
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|||||||||| |||||||||| |||||||||| ||||| | ||||| ||| |||||| ||||||| |||||||| ||||||||||||||||||| | |
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| T |
31329344 |
agttatttggatttgtgttggctctggaattttccattaagtaccattggcggcatcttagggtggag-gggactcctggagtgctttgcaggctttcgg |
31329246 |
T |
|
| Q |
120 |
gaacccttcgttagtttcattttctctttgaaa |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| |
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| T |
31329245 |
gaacccttcgttagttccattttctcttcgaaa |
31329213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 31336065 - 31335934
Alignment:
| Q |
20 |
agttatttggctttgtgttggttctggaatttgccattcaacaccatctgcgtcatcttttggtggagagggactcccagagtgctttgcaggctttccg |
119 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| ||||| | ||||| ||| |||||| ||||||| |||||||| ||||||||||||||||||| | |
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| T |
31336065 |
agttatttggatttgtgttggctctggaattttccattaagtaccattggcggcatcttagggtggag-gggactcctggagtgctttgcaggctttcgg |
31335967 |
T |
|
| Q |
120 |
gaacccttcgttagtttcattttctctttgaaa |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| |
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| T |
31335966 |
gaacccttcgttagttccattttctcttcgaaa |
31335934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 27854770 - 27854695
Alignment:
| Q |
189 |
tttcatctcatatttttcgcgaaggaaattgttgtacagataagttagcaaatcatggtcacaacttggttgatgtt |
265 |
Q |
| |
|
|||| |||||||| ||| ||||| ||||| |||| || ||||||||||||||||||||||| ||||||||||||| |
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| T |
27854770 |
tttcttctcatatcttttgcgaacgaaat-gttgcacggataagttagcaaatcatggtcatggcttggttgatgtt |
27854695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 20937160 - 20937114
Alignment:
| Q |
191 |
tcatctcatatttttcgcgaaggaaattgttgtacagataagttagc |
237 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| | ||||||||||| |
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| T |
20937160 |
tcatctcatatttttcgtgaaggtaattgttgtgcggataagttagc |
20937114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 22523149 - 22523103
Alignment:
| Q |
191 |
tcatctcatatttttcgcgaaggaaattgttgtacagataagttagc |
237 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| | ||||||||||| |
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|
| T |
22523149 |
tcatctcatatttttcgtgaaggtaattgttgtgcggataagttagc |
22523103 |
T |
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