View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_46 (Length: 270)
Name: NF9771_low_46
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 54629604 - 54629354
Alignment:
| Q |
7 |
caacatgcgtcaaaaacttaaagggaaaattacaaagacctccccttaggttaggttaaaagacacacacctcccctctagtttcaaaaatacaattacc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54629604 |
caacatgcgtcaaaaacttaaagggaaaattacaaagacctccccttaggttaggttaaaagacacacacctcccctctagtttcaaaaatacaattacc |
54629505 |
T |
|
| Q |
107 |
tcccctcaatataactctgttaatcatcagttaattcagacttacaatagatagtcttgatactatgaattatccctctctatgattgaatgcatcaacc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54629504 |
tcccctcaatataactctgttaatcatcagttaattcagacttacaatagatagtcttgatactatgaattatccctctctatgattgaatgcatcaacc |
54629405 |
T |
|
| Q |
207 |
gctgcaactaattgaacccaaaaatgttaatccaaatctttatttccatct |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54629404 |
gctgcaactaattgaacccaaaaatgttaatccaaatctttatttccatct |
54629354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 9880828 - 9880702
Alignment:
| Q |
34 |
aattacaaagacctccccttaggttaggttaaaagacacacacctcccctctagtttcaaaaatacaattacctcccctcaatataactctgttaatcat |
133 |
Q |
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||||| ||| |||||| || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
9880828 |
aattataaaaacctcctctaagatttggttaaaagacacacacctcccctctagtttaaaaaatacaattacctcccctcaatttaactctgttaagcat |
9880729 |
T |
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| Q |
134 |
cagttaattcagacttacaatagatag |
160 |
Q |
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|||||||||||||||||||| |||| |
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| T |
9880728 |
atgttaattcagacttacaatacatag |
9880702 |
T |
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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 44538863 - 44538965
Alignment:
| Q |
27 |
aagggaaaattacaaagacctccccttaggttaggttaaaagacacacacctcccctctagtttcaaaaatacaattacctcccctcaatataactctgt |
126 |
Q |
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||||||||||||||| |||||||| | ||||| ||||||| |||||| |||||||||| |||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
44538863 |
aagggaaaattacaatgacctcccttaaggtttggttaaatgacacatacctcccctccagtttcaataatacaacaacctcccctcaatctaactctgt |
44538962 |
T |
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| Q |
127 |
taa |
129 |
Q |
| |
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||| |
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| T |
44538963 |
taa |
44538965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 42326914 - 42327031
Alignment:
| Q |
31 |
gaaaattacaaagacctccccttaggttaggttaaaagacacacacctcccctctagtttcaaaaatacaattacctcccctcaatataactctgttaat |
130 |
Q |
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|
|||||||||| |||||||||| | || ||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||||| |
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| T |
42326914 |
gaaaattacagagacctccccaaaaattttgttaaaagacacatacctcccctctagtttcaaaaatacagtaacctcccctcaaactaactctgttaac |
42327013 |
T |
|
| Q |
131 |
catcagttaattcagact |
148 |
Q |
| |
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|||| |||| |||||||| |
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| T |
42327014 |
catctgttagttcagact |
42327031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 2863979 - 2864091
Alignment:
| Q |
28 |
agggaaaattacaaagacctccccttaggttaggttaaaagacacacacctcccctctagtttc-aaaaatacaattacctcccctcaatataactctgt |
126 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| |||||| | |||| | ||||||||||||||| |||||||| || |||||||||||| |||| |||| |
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| T |
2863979 |
agggagaattacattgacctcccctgaggttttgttaaatgtcacatatctcccctctagtttcaaaaaatac-ataacctcccctcaacttaaccctgt |
2864077 |
T |
|
| Q |
127 |
taatcatcagttaa |
140 |
Q |
| |
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||| |||| ||||| |
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| T |
2864078 |
taaccatctgttaa |
2864091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 37628647 - 37628699
Alignment:
| Q |
61 |
gttaaaagacacacacctcccctctagtttcaaaaatacaattacctcccctc |
113 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||| ||||||| || ||||||| |
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|
| T |
37628647 |
gttaaatgtcacacacctcccctctaatttcaaatatacaataacatcccctc |
37628699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 51292515 - 51292429
Alignment:
| Q |
29 |
gggaaaattacaaagacctccccttaggttaggttaaaagacacacacctcccctctagtttcaaaaatacaattacctcccctcaa |
115 |
Q |
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||||||||||||| ||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
51292515 |
gggaaaattacaaccacctcccctaaggtttagttaaatgtcacacacctcccctctagtttcaaaaatacaataacctcccttcaa |
51292429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 43551413 - 43551460
Alignment:
| Q |
63 |
taaaagacacacacctcccctctagtttcaaaaatacaattacctccc |
110 |
Q |
| |
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|||| |||||| ||||||||||||||||||| |||||||| ||||||| |
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| T |
43551413 |
taaatgacacatacctcccctctagtttcaataatacaataacctccc |
43551460 |
T |
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