View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_5 (Length: 547)
Name: NF9771_low_5
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 6581514 - 6580984
Alignment:
| Q |
1 |
ccgacaaagtttattctgaaacagaagttcatctggcaatgactccattacaacaggttgtgttttttgggtttcataaacggatgagtgttacaggttc |
100 |
Q |
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| T |
6581514 |
ccgacaaagtttattctgaaacagaagttcatctggcaatgactccattacaacaggttgtgttttttgggtttcataaacggatgagtgttacaggttc |
6581415 |
T |
|
| Q |
101 |
gatgtctggtttctcatctgtgagagtaaatgtcttattgtcactggattgattaataatcattacattttcgacatctgtttttgcataaatgaagttg |
200 |
Q |
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| T |
6581414 |
gatgtctggtttctcatctgtgagggtaaatgtcttattgtcactggattgattaataatcattacattttcgacatctgtttttgcataaatgaagttg |
6581315 |
T |
|
| Q |
201 |
ttggaactgttgaaggcggtagagcacccacaaaaatcaagacagacttgaagaaacctattgttaatcttgcttgtcatcctcgccttcctgttctggt |
300 |
Q |
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| T |
6581314 |
ttggaactgttgaaggcggtagagcacccacaaaaatcaagacagacttgaagaagcctattgttaatcttgcttgtcatcctcgccttcctgttctggt |
6581215 |
T |
|
| Q |
301 |
attacttaaatacttgtcataattctatttattggcaagttcatattatatgtatttctccataaaaaatatctagtcttcagtctttcttctaatgatg |
400 |
Q |
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| T |
6581214 |
attacttaaatacttgtcataattctatttattggcaagttcatattatatgtatttctccataaaaaatatctagtcttcagtctttcttctaatgatg |
6581115 |
T |
|
| Q |
401 |
atatttcaatctcccttctctactttgttgctttgtgtcctagtatgttgcttatgcagatggtttgattcgagcatataacattcacacctatgctgtt |
500 |
Q |
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| T |
6581114 |
atacttcaatctcccttctctactttgttgctttgtgtcctagtatgttgcttatgcagatggtttgattcgagcatataacattcacacctatgctgtt |
6581015 |
T |
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| Q |
501 |
cattacacactacaacgtgagatgatttttg |
531 |
Q |
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| T |
6581014 |
cattacacactacaacgtgagatgatttttg |
6580984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 442 - 523
Target Start/End: Original strand, 34238709 - 34238790
Alignment:
| Q |
442 |
agtatgttgcttatgcagatggtttgattcgagcatataacattcacacctatgctgttcattacacactacaacgtgagat |
523 |
Q |
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| T |
34238709 |
agtatgttgcttatgcagaaggtttgattcgggcatataacattcatacctatgctgttcattacacacttcaacgtgagat |
34238790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 34238472 - 34238597
Alignment:
| Q |
176 |
atctgtttttgcataaatgaagttgttggaactgttgaaggcggtagagcacccacaaaaatcaagacagacttgaagaaacctattgttaatcttgctt |
275 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||| || | || || |||||||| ||||| ||||||| |||| || |||||||||| |
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| T |
34238472 |
atctgtttttctgtaaatgaagttgttggaacggttgaaggcggtcgaacgcctaccaaaatcaaaccagacctgaagaaggctatcgtaaatcttgctt |
34238571 |
T |
|
| Q |
276 |
gtcatcctcgccttcctgttctggta |
301 |
Q |
| |
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|||||||||| || ||||| |||||| |
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| T |
34238572 |
gtcatcctcgactccctgtactggta |
34238597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 34238310 - 34238395
Alignment:
| Q |
14 |
ttctgaaacagaagttcatctggcaatgactccattacaacaggttgtgttttttgggtttcataaacggatgagtgttacaggtt |
99 |
Q |
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|||||| |||||||||||| |||| | || ||| | |||| ||||||||||||||||||||||| | |||||||||||||||| |
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| T |
34238310 |
ttctgatacagaagttcatatggctttaaccccactccaacctgttgtgttttttgggtttcataagagaatgagtgttacaggtt |
34238395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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