View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_50 (Length: 258)
Name: NF9771_low_50
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29036091 - 29035871
Alignment:
| Q |
1 |
atttcaaagagtgatcaacaacaacaaactgcagattctaatcaatctcagttgcaacgtgatgacacaaaagatggagaaggagattctactgatttca |
100 |
Q |
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| T |
29036091 |
atttcaaagagtgatcaacaacaacaaactgcagattctaatcaatctcagttgcaacgtgatgacacaaaagatggagaaggagattctactgatttca |
29035992 |
T |
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| Q |
101 |
ctactggtgctccttgcttacctcacaagaacaagcctcaaacacttggtcataaattttgatgataaaataagaacatagaaatattaattatgtgttc |
200 |
Q |
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| T |
29035991 |
ctcctggtgctccttgtttacctcacaagaacaagcctcaaacacttggtcataaattttaatgataaaataagaacatagaagtattaattatgtgttc |
29035892 |
T |
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| Q |
201 |
catatgtatattaattttaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
29035891 |
catatgtatattaattttaac |
29035871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 29035870 - 29035812
Alignment:
| Q |
186 |
attaattatgtgttccatatgtatattaattttaacttttctgtgtgttttctgatacc |
244 |
Q |
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| T |
29035870 |
attaattatgtgttccatatgtatattaattttaacttttgtgtgtgttttctgatacc |
29035812 |
T |
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